Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_M24
(789 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 29 0.76
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 29 1.0
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 28 1.3
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 28 1.8
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 27 2.3
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S... 27 3.1
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 27 3.1
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 27 3.1
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.4
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 26 5.4
SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.4
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 26 5.4
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 26 7.1
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 26 7.1
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 25 9.4
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 25 9.4
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 25 9.4
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 29.1 bits (62), Expect = 0.76
Identities = 18/90 (20%), Positives = 39/90 (43%)
Frame = +3
Query: 441 FCRFEANTKLASLYVPEKDYKINIYNFNGEKLGSLEYDDASVKLGDVMCLKFIEFPCDRP 620
FC+F N ++ V + + + +Y++ +L + + K+ +V K + P D
Sbjct: 18 FCKF-VNASSWNVIVAKVNC-LEVYSYENNRLCLITSANIFAKIVNVKAFKPVSSPTDHI 75
Query: 621 CLLAGYEAGWLLLWDLNTNKCISKLQVLXC 710
+ + L WD N N + +++ C
Sbjct: 76 IVATDSFRYFTLFWDANDNTVSNGIKIQDC 105
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +3
Query: 651 LLLWDLNTNKCISKLQVLXCPMSVDYHLEQQRGIIXNASNVIQIFN 788
L +WDLNT C +L CP+ + + ++ + + +Q+++
Sbjct: 683 LRVWDLNTGSC---RDILKCPLGHIFFQHDESKVVSGSHSTLQLWD 725
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 28.3 bits (60), Expect = 1.3
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = +3
Query: 459 NTKLASLYVPEKDYKINIYNFNGEKLGSLE---YDDASVKLGDVMCLKFIEFPCDRPCLL 629
+T+L + +K K+ N E+L LE YD ++ L +V CL ++ CL
Sbjct: 701 HTQLVDDAIIDKFRKLQSKKINNEQLKQLENLMYDKFTISLFNVRCLIGPDYETGWRCLP 760
Query: 630 AGYEAGWLLLWDLNTNKCISKLQ 698
G + L L+ N IS LQ
Sbjct: 761 KGCDYHILKECSLDINFEISILQ 783
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 624 LLAGYEAGWLLLWDLNTNKCISKLQVLXCPM 716
+++G G L++WDLN + +S L V P+
Sbjct: 2357 IVSGDAGGNLIIWDLNRAEFVSSLSVYKLPI 2387
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/56 (23%), Positives = 27/56 (48%)
Frame = +3
Query: 480 YVPEKDYKINIYNFNGEKLGSLEYDDASVKLGDVMCLKFIEFPCDRPCLLAGYEAG 647
++ +D + +YN + +LGS +K G+++ + E ++ YEAG
Sbjct: 76 FLVREDSNLTLYNSDFTRLGSCHSRVPQIKEGELLRISGKEISIEKEISAESYEAG 131
>SPAC227.07c |pab1||protein phosphatase regulatory subunit
Pab1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 27.1 bits (57), Expect = 3.1
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Frame = +3
Query: 330 HTDSHLITQEKGGKLKVFELTNSGYEEDAVIEVDYPGFCRFEANTK----LASLYVPEKD 497
HT +L T +KGG++ +FE +S +Y F F+++ L SL + EK
Sbjct: 39 HTGDYLATGDKGGRVVLFERNHSKK------GCEYKFFTEFQSHEPEFDYLKSLEIEEKI 92
Query: 498 YKINIYNFNGEKLGSLEYDDASVKL 572
KI L +D ++KL
Sbjct: 93 NKIRWCKRTNRAHFLLSTNDKTIKL 117
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 27.1 bits (57), Expect = 3.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 737 TAKRNHXQCFKCDT 778
+ K+ H QCFKCDT
Sbjct: 274 SGKKLHPQCFKCDT 287
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 27.1 bits (57), Expect = 3.1
Identities = 39/182 (21%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Frame = +3
Query: 207 PGGLERLLAGSKNGY-VYAYNLQTNRVQQKIQVGQAPILHL-IHTDSHLITQEKGGK-LK 377
P G E + AGS++ + ++ +++QT ++ + + + P+ L ++ L+ K ++
Sbjct: 434 PSG-EIVCAGSQDSFEIFMWSVQTGQLLETLAGHEGPVSSLSFNSSGSLLASGSWDKTVR 492
Query: 378 VFEL-TNSGYEEDAVIEVDYPGFCRFEANTKLASLYVPEKDYKINIYN---------FNG 527
++++ + SG E I D F + K + V D ++ +N +G
Sbjct: 493 IWDIFSRSGIVEPLPIPSDVLSLA-FHPDGK--EVCVASLDGQLTFWNVQEGKQTSLIDG 549
Query: 528 EK--LGSLEYDDASVKLGDVMCLKF--IEFPCDRPCLLAGYEAGWLLLWDLNTNKCISKL 695
K G +DDA + F I + D C+L+ + ++ L+D+ T I K
Sbjct: 550 RKDLSGGRRFDDARTAENSSLNKTFTSICYSADGSCVLSAGTSKYVCLYDIITGVLIKKF 609
Query: 696 QV 701
Q+
Sbjct: 610 QL 611
>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 471
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -2
Query: 332 VYKMKNRSLTNLYLLLNSICLEVVC--VNITVFRTG 231
++ R LT+ ++L CL +VC ++IT+ TG
Sbjct: 336 IFSYLTRYLTDRDIILLGCCLNIVCMVIHITIHYTG 371
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 627 LAGYEAGWLLLWDL 668
L G GWLLLWDL
Sbjct: 1386 LIGTTKGWLLLWDL 1399
>SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -2
Query: 143 IRRKQCHFWTSSNQNLCRN*KLK-RLTKLIKPLETKPQLRTTQN 15
++ +Q W+ Q L ++ + K +L +++KPL + P+L+ N
Sbjct: 84 MQERQERNWSLERQRLVQHFESKTKLQEILKPLSSDPKLKQPSN 127
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 390 TNSGYEEDAVIEVDYPGFCRFEANTKLASLYVPEKDYKINI 512
++S EEDA +E+D P + E N AS + K I +
Sbjct: 249 SDSEIEEDATVEIDRPVPTKTEENLLSASQLLKPKQQAIKL 289
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 25.8 bits (54), Expect = 7.1
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +3
Query: 420 IEVDYPGFCRFEANTKLASLYVPEKD-YKINIYNFNGEKLGSLEYDDASVKLGDVMCLKF 596
+ + Y G R + K ++ + E D KIN L LEY DA+V L + C+
Sbjct: 578 VAMAYYGLLRTKNYEKNENILIYEADDVKINFPQLIIAYLKHLEYVDAAVYLDYIACIPL 637
Query: 597 I 599
+
Sbjct: 638 V 638
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 612 DRPCLLAGYEAGWLLLWDLNTNKCI 686
DR +L+G + + +W L TN C+
Sbjct: 403 DRGLVLSGSDDSTIKIWSLETNTCL 427
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -1
Query: 300 LVSSAELYLSGGCMRKHNRFSNRLVTSLSPRVKN*KPVNKLAHYRHFG*CKQDPEE 133
L+ L+L+ C+ ++ R + V++ R+ V+ L RHFG DP+E
Sbjct: 625 LIELERLWLTRECILRYLRATKWHVSNAKKRI-----VDTLVWRRHFGVNNMDPDE 675
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +3
Query: 177 PVYSLAFSFLPGGLERLLAGSKNGYVYAYNLQTNRVQQKIQVGQAPI 317
P+ S A P G + S NG+ + ++ + QK+ V + P+
Sbjct: 566 PLPSPAHIMYPEGSPGFIQHSPNGFTHGHSASPVNIGQKLDVPERPM 612
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 657 LWDLNTNKCISKLQV 701
LWD+ T +CI KL++
Sbjct: 428 LWDVETGQCILKLEI 442
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,087,858
Number of Sequences: 5004
Number of extensions: 63266
Number of successful extensions: 177
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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