Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_M24
(789 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0801 - 5993726-5994160,5994811-5994969,5995071-5995211,599... 33 0.20
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851... 32 0.60
03_05_0700 + 26920743-26920771,26920880-26920991,26921205-269213... 31 1.4
01_07_0081 - 40959279-40959375,40959463-40959589,40960138-409603... 30 1.8
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467... 30 2.4
02_05_0300 + 27681204-27681656,27681745-27681840,27681933-276820... 29 3.2
06_01_0320 - 2320317-2320336,2320791-2320902,2321092-2321236,232... 28 7.4
02_02_0663 - 12740733-12741104,12741260-12741326,12741709-127418... 28 7.4
10_02_0117 + 5471920-5472401,5472602-5472668,5472956-5473012,547... 28 9.7
01_01_1010 - 7996921-7997673,7999212-7999399,7999688-7999784,800... 28 9.7
>06_01_0801 -
5993726-5994160,5994811-5994969,5995071-5995211,
5995999-5996097,5996180-5996542,5996929-5997150,
5997257-5997448,5997997-5998056,5998162-5998378,
5998471-5998523,5999013-5999084,5999928-6000113,
6000986-6001132,6002902-6003075,6003149-6003300,
6004269-6004360,6004549-6004710,6004875-6005053,
6005173-6005304,6005454-6005507,6006082-6006191,
6006317-6006487,6006577-6006663,6008488-6008611,
6009355-6009564
Length = 1330
Score = 33.5 bits (73), Expect = 0.20
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +3
Query: 270 QTNRVQQKIQVGQAPILHLIHTDSHLITQ--EKGGKLKVFELTNSGYEEDAVIEVDYPGF 443
+T ++ Q +A I LIH L G +KVF + +E++ V++P
Sbjct: 107 RTRKLDQAALETEARITPLIHEKKRLFNDLLTLKGNVKVFCRSRPLFEDEGSSVVEFPDD 166
Query: 444 CRFEANTKLASLYVPEKDYKIN 509
NT SL P+KDY+ +
Sbjct: 167 FTIRVNTGDESLTNPKKDYEFD 188
>09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,
8511209-8511523,8511576-8511682,8512559-8512629,
8512952-8513029,8513390-8513454,8514224-8514274,
8514373-8514414,8514785-8515105,8515154-8517880
Length = 1480
Score = 31.9 bits (69), Expect = 0.60
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = -1
Query: 300 LVSSAELYLSGGCM--RKHNRFSNRLVTSLSPRVKN*KPVNKLAHYRHFG*CKQDPEEAV 127
LV S Y GC+ H ++ L S S ++K K V L H R+ G C+++ EA+
Sbjct: 1056 LVQSQWWYNLEGCLLHSPHLKYLRILDVSSSDQIKLGKSVGVLHHLRYLGICQREIPEAI 1115
Query: 126 PFLDKLK 106
+ KL+
Sbjct: 1116 CKMYKLQ 1122
>03_05_0700 +
26920743-26920771,26920880-26920991,26921205-26921306,
26921391-26921503,26921858-26921927,26922348-26922425,
26922500-26922616,26922738-26922832,26923080-26923159,
26923405-26923532
Length = 307
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = +3
Query: 597 IEFPCDRPCLLAGYEAGWLLLWDLNTNKCISKLQVLXCPMSVDYHLEQQRGIIXNASNVI 776
+ F CD + +G E G + +WDL T C + + +V H Q+ I + + I
Sbjct: 95 VGFHCDGNWMYSGSEDGTVRIWDLRTATCQREYESRAAVNTVVLHPNQKELISGDQNGNI 154
Query: 777 QIFN 788
++++
Sbjct: 155 RVWD 158
>01_07_0081 -
40959279-40959375,40959463-40959589,40960138-40960339,
40962414-40963361
Length = 457
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 159 RNVDNVPVYSLAFSFLPGGLERLLAGSKNGYVYAYNLQTN 278
R D +YSLAFS L+ L S G ++ +NL+ N
Sbjct: 319 RGADRAEIYSLAFS---NNLQYLAVSSDKGTIHVFNLKIN 355
>01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,
4675953-4676072,4676185-4676313,4676394-4676442,
4676899-4676970,4677574-4677707,4677798-4677915,
4678332-4678541,4678630-4678942,4679539-4679632,
4679854-4679962,4680243-4680514,4680597-4680724,
4680832-4681066,4681570-4681758,4681845-4682128,
4682218-4682398,4682486-4682728,4682904-4682986,
4683119-4683227,4687996-4688091,4688675-4688764,
4688881-4689129,4689233-4689412,4690179-4690250,
4691385-4691474,4691605-4691705,4691794-4691959
Length = 1757
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/53 (22%), Positives = 28/53 (52%)
Frame = +3
Query: 543 LEYDDASVKLGDVMCLKFIEFPCDRPCLLAGYEAGWLLLWDLNTNKCISKLQV 701
+++ A++++ D + I P L +G G + +WD N+ KC+ +++
Sbjct: 1397 VDWHVANLEIQDRAAISGISLPVGSDKLYSGSADGSVRVWDCNSGKCVDAIKM 1449
>02_05_0300 +
27681204-27681656,27681745-27681840,27681933-27682022,
27682126-27682227,27682310-27682456,27683608-27683748,
27683749-27683808,27685133-27685230,27685308-27685410,
27685954-27686037
Length = 457
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 204 LPGGLERLLAGSKNGYVYAYNLQTNRVQQKIQVGQ 308
LP G ++L +GSK+G V ++ QT + I +G+
Sbjct: 158 LPAGSDKLYSGSKDGTVRMWDCQTGQCAGVINMGR 192
>06_01_0320 -
2320317-2320336,2320791-2320902,2321092-2321236,
2321353-2321459,2321572-2321665,2321752-2321948,
2322311-2322382,2322504-2322618,2323060-2323176,
2323253-2323344,2323445-2323621,2323746-2323820,
2323911-2324051,2324671-2324859,2325298-2325363,
2325445-2325595,2325718-2325786,2326293-2326441,
2326526-2326657,2326756-2327081,2327167-2327203,
2327926-2327980,2328242-2328309,2328464-2328466
Length = 902
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 612 DRPCLLAGYEAGWLLLWDLNTNKCISKLQ 698
DRP L+ G + +WD T C+ L+
Sbjct: 193 DRPYLITGSDDSTAKVWDYQTKSCVQTLE 221
>02_02_0663 -
12740733-12741104,12741260-12741326,12741709-12741809,
12741852-12742273,12743678-12743685,12745164-12745396
Length = 400
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +3
Query: 219 ERLLAGSKNGYVYAYNLQTNRVQQKIQVGQAP 314
+ L +GS +G +Y Y+ +++R+ KIQ + P
Sbjct: 342 KELTSGSSDGCIYFYDYKSSRLLSKIQAFKEP 373
>10_02_0117 +
5471920-5472401,5472602-5472668,5472956-5473012,
5473301-5473538,5476504-5476611,5476868-5477111,
5478307-5478550,5478636-5478842
Length = 548
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 494 LLRYIE*CEFCVGFESTKTRIIYFNYGIFF 405
LLRY + F ST+ RI+YF Y I F
Sbjct: 137 LLRYSDSSFFGTAHISTQLRIVYFQYNIRF 166
>01_01_1010 -
7996921-7997673,7999212-7999399,7999688-7999784,
8000420-8000767,8001130-8001231,8001432-8001501,
8001747-8001802,8001891-8002010
Length = 577
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 366 GKLKVFELTNSGYEEDAVIEVDYP 437
G+L+ EL +S +DAV+E+D P
Sbjct: 526 GRLRFLELRHSDVVDDAVLEIDAP 549
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,593,390
Number of Sequences: 37544
Number of extensions: 388242
Number of successful extensions: 892
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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