Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_M23
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    27   2.2  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.9  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    25   8.9  

>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +2

Query: 59  RQASFVSFSICTVQSVPSQSLSFFVATNKLPFCDDQEF*FAGQQHIRC--*CYSTRRD 226
           R A ++S S+  ++ +    LS     N  PFC D  +    QQH +C   C  +R+D
Sbjct: 124 RLAVYLSTSLVYIKQL---HLSKPALGNSWPFCLDHSYILEDQQHNKCLVHCNQSRKD 178


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -2

Query: 427 SMIYNIILLDSKHKRVHVSIILRTKLF--FRCTMFCYYLRRF 308
           S I   I+     K   V++IL +++F    CTMF Y+ R F
Sbjct: 129 SCIIGHIMYALADKAKSVALILVSRIFTGVACTMFLYHKRYF 170


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 78  RFQSVPCKVFHHNHC 122
           R   +PC  + HNHC
Sbjct: 50  RIAKIPCGHYFHNHC 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,767,695
Number of Sequences: 5004
Number of extensions: 33450
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)