Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_M22
         (714 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      25   0.46 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   3.3  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   3.3  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   7.5  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   7.5  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   7.5  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   7.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   7.5  

>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 427 QLTPEIRVKGAAQIQECKLTATQGTVEYKG 516
           +L  +I+V GA+   EC++T     ++Y G
Sbjct: 25  RLNSKIQVSGASTTDECQVTPVIHVLQYPG 54


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 418 GCSSHYRQGPHHQAPP 371
           G + H +QGP HQ PP
Sbjct: 195 GANMH-QQGPPHQQPP 209


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 418 GCSSHYRQGPHHQAPP 371
           G + H +QGP HQ PP
Sbjct: 197 GANMH-QQGPPHQQPP 211


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 416 LQFTLPAGSTSPSTTGNASVG 354
           LQ  LPAGS     +GNA  G
Sbjct: 433 LQTGLPAGSYCDVISGNAENG 453


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 416 LQFTLPAGSTSPSTTGNASVG 354
           LQ  LPAGS     +GNA  G
Sbjct: 434 LQTGLPAGSYCDVISGNAENG 454


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 323 VEHTLAQNRYLRQR 364
           ++H  A+NRYL +R
Sbjct: 243 LKHEFAENRYLTER 256


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 76  ILLNYSWNNC*SQKSINMWEK 14
           +L+  SW N  +Q+ INM+ K
Sbjct: 355 LLVELSWMNDEAQQEINMFLK 375


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 5/32 (15%), Positives = 16/32 (50%)
 Frame = -1

Query: 441 LWCQLMYKAAVHITGRVHITKHHRECLCRRYL 346
           +WC   +++   +T  +  T+H+   + +  +
Sbjct: 482 MWCGQSFRSLAEMTSHMQQTQHYTNIISQEQI 513



 Score = 21.0 bits (42), Expect = 9.9
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +1

Query: 271 QMSHTLTMSSQQNGYKLGGTYIGTKQISPTEAFPVVLGDVDPAGN 405
           Q SH L M+S     +   + + +   SP   FPV      P G+
Sbjct: 159 QQSHRLMMTSPSGFNRASVSPLISSSSSPPGVFPVDAPMHSPPGD 203



 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 401  PAGSTSPSTTGNAS 360
            P+GS+ P +TG+ S
Sbjct: 1114 PSGSSGPGSTGSKS 1127


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,593
Number of Sequences: 336
Number of extensions: 4544
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)