Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_M22
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit...    47   2e-06
SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2...    28   1.5  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    27   2.0  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    26   6.1  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    25   8.1  

>SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit
           Tom40|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 7/187 (3%)
 Frame = +1

Query: 172 GTLDELHKK-TKEVMPVN--FEGGKLMVNRGL--SNHFQMSHTLTMSSQQNGYKLGGTYI 336
           GT + L K+ +K+++  N  F G +  V +G   S  F +SH   + SQ        T  
Sbjct: 31  GTCENLSKEVSKDILLSNYAFTGVRADVTKGFCTSPWFTVSHAFALGSQVLPPYSFSTMF 90

Query: 337 GTKQISPTEAFPVVLGDVDPAGNVNCSLIHQLTPEIRVKGAAQIQECKL-TATQGTVEYK 513
           G + +        + G VD  G V   L       +  K   Q+    +    Q   ++K
Sbjct: 91  GGEPL-------FLRGSVDNDGAVQAMLNCTWNSNVLSKVQMQLSNGAVPNMCQIEHDHK 143

Query: 514 GSDYSLALVAGKPDFNDK-SAMFVGHYLQSVTKRLALGAELVYQSGARIMGGEICIVSGA 690
           G D+S +  A  P + +K + +++   LQSVT +L+LG E ++Q  +  +G E   +S  
Sbjct: 144 GKDFSFSFKAMNPWYEEKLTGIYIISLLQSVTPKLSLGVEALWQKPSSSIGPEEATLSYM 203

Query: 691 AXYTMDD 711
             Y   D
Sbjct: 204 TRYNAAD 210


>SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 355 EISVLCQCMFHPICIHFVVSSLLMYETS 272
           ++  LCQC ++  C HF +S  L++ T+
Sbjct: 78  DVYFLCQCTYYLACFHF-LSEWLLFRTT 104


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 139 FCKSVLVS-PELKTRYLLDIAPILL-NYSWNNC*SQKSINMWEK 14
           + +SV +S PE   ++L D+ P+LL +Y W     +     WE+
Sbjct: 512 YLRSVSISNPEKSVQFLRDLFPLLLRHYEWFRETQKGDFETWER 555


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/63 (25%), Positives = 32/63 (50%)
 Frame = +1

Query: 295 SSQQNGYKLGGTYIGTKQISPTEAFPVVLGDVDPAGNVNCSLIHQLTPEIRVKGAAQIQE 474
           S +Q GY +  + +      P + + + +G +DP   VNC+  H L  ++  K   ++ +
Sbjct: 341 SFEQPGYPMNPSMMFAAMPPPIDPYSIFVGQLDP---VNCT--HYLLVDLFSK-YGKVID 394

Query: 475 CKL 483
           CK+
Sbjct: 395 CKI 397


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 373 PGMPLSEISVLCQCMFHPICIHFVVSSLLMYE 278
           P   L  IS L +  FH +  HF+     +YE
Sbjct: 666 PAQKLEAISTLVEKEFHSVVYHFIGIQRSLYE 697


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,251,681
Number of Sequences: 5004
Number of extensions: 72089
Number of successful extensions: 186
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)