Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_M22
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0846 + 11712530-11712740,11713974-11714055,11714127-117142...    46   2e-05
01_01_1200 - 9670109-9670165,9670569-9670664,9670886-9670969,967...    37   0.018
04_03_0626 + 18135267-18136304                                         30   1.6  
05_03_0653 + 16617121-16617359,16618892-16618955,16619455-166194...    28   8.5  
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204...    28   8.5  

>03_02_0846 +
           11712530-11712740,11713974-11714055,11714127-11714226,
           11714311-11714406,11714492-11714542,11714685-11714750,
           11715413-11715514,11716099-11716167,11716251-11716334,
           11716531-11716626,11717216-11717268,11718808-11718945,
           11719003-11719435
          Length = 526

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 6/156 (3%)
 Frame = +1

Query: 214 PVNFEGGKLMVNRGLSNHFQMSHTLTMSSQQNGYKLGGTY-IGTKQISPTEAF--P--VV 378
           P  FEG +    +GL+  F +SH++ M S +   +   T  + T        F  P  ++
Sbjct: 75  PELFEGLRFDFTKGLNQKFSLSHSVFMGSLEVPSQSTETIKVPTSHYEFGANFIDPKLIL 134

Query: 379 LGDVDPAGNVNCSLIHQLTPEIRVKGAAQI-QECKLTATQGTVEYKGSDYSLALVAGKPD 555
           +G V   G +N  +   LT ++ +K  AQ+  E   +      +YKG+DY      G   
Sbjct: 135 VGRVMTDGRLNARVKCDLTDDLTLKINAQLTHEPHYSQGMFNFDYKGTDYRAQFQIGN-- 192

Query: 556 FNDKSAMFVGHYLQSVTKRLALGAELVYQSGARIMG 663
               +A +  +Y+QSVT  L++G E+ +    R  G
Sbjct: 193 ----NAFYGANYIQSVTPNLSMGTEIFWLGHQRKSG 224


>01_01_1200 -
           9670109-9670165,9670569-9670664,9670886-9670969,
           9671050-9671118,9671892-9671993,9672807-9672872,
           9673791-9673841,9673953-9674048,9674141-9674279,
           9674343-9674424,9674528-9674723
          Length = 345

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
 Frame = +1

Query: 373 VVLGDVDPAGNVNCSLIHQLTPEIRVKGAAQI-QECKLTATQGTVEYKGSDYSLALVAGK 549
           +++G V   G V   +   L   + +K  AQ+  E   +    + +YKG D+      G 
Sbjct: 141 MLIGRVSHDGRVTARVKCDLLENLCLKINAQLTNEPHYSQGMFSFDYKGKDFRSQFQLGN 200

Query: 550 PDFNDKSAMFVGHYLQSVTKRLALGAELVYQSGARIMG 663
                 +A + G+Y+QSVTK L+LG E  +    R  G
Sbjct: 201 ------NAFYGGNYIQSVTKNLSLGTEAFWLGQQRKSG 232


>04_03_0626 + 18135267-18136304
          Length = 345

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +1

Query: 370 PVVLGDVDPAGNVNCSLIHQLTPEIRVKGAAQIQECKLTATQGTVEYKGSDYSL 531
           P++ GDV PA   N  L  +L  ++   G + I E    A +GT  Y   DY L
Sbjct: 143 PILHGDVKPA---NILLTEELVAKVSDFGCSTIDEKTQVAPKGTPGYLDPDYLL 193


>05_03_0653 +
           16617121-16617359,16618892-16618955,16619455-16619485,
           16619577-16619848,16620528-16620633,16620715-16620872,
           16621527-16621714,16621786-16621855,16622814-16622984,
           16624363-16624838,16625625-16625871,16626158-16626490,
           16627329-16627412,16627751-16627843,16627966-16628025,
           16628582-16628680,16628830-16628970,16629207-16629287,
           16629895-16629966,16631160-16631231,16632083-16632176,
           16632257-16632339,16632455-16632532,16632914-16632970,
           16633055-16633132,16633236-16633357,16633463-16633623,
           16634419-16634495,16634570-16634683,16634857-16634958,
           16635368-16635436,16635437-16635577,16635936-16636109,
           16636934-16637063,16637137-16637276,16637369-16637446,
           16637813-16637911,16638408-16638803
          Length = 1749

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 500 LWNTKVQITALPWWRGNQTLTTSLQCLLDII 592
           LWN   + TALP+ RG  TL T+   L + +
Sbjct: 816 LWNFAQRTTALPFGRGAFTLATTYTLLTEAL 846


>04_04_1694 - 35419278-35419565,35419744-35419861,35420404-35420490,
            35420909-35420931,35421647-35421843,35421964-35422159,
            35422382-35422481,35423288-35423374,35424053-35424282,
            35424678-35424763,35425148-35425271,35425415-35428573,
            35430014-35430019
          Length = 1566

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 336  WHKTDISDRGIPGGAW*CGPC 398
            +H+T +SD+ +P G+W C  C
Sbjct: 1047 YHQTCLSDQELPEGSWYCHNC 1067


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,413,169
Number of Sequences: 37544
Number of extensions: 480208
Number of successful extensions: 1079
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)