Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_M21
(485 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 30 0.21
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 28 0.65
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 1.5
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 27 2.0
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch... 26 3.5
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-... 25 4.6
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch... 25 4.6
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 25 4.6
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 4.6
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 25 6.1
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 25 6.1
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 25 8.0
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|... 25 8.0
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 25 8.0
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 25 8.0
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 8.0
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 29.9 bits (64), Expect = 0.21
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = +3
Query: 96 SHNGYNNG*PRDRGRTQTEIEGCSPLPVPFDRQSVHHANATHPHQDAGSPPCAVTKSLPL 275
+HN Y P QT + + L PF+R H+N+ P A S P + T S
Sbjct: 47 THNSYPLSTPSSFQHGQTRLPPINCLAEPFNRPQPWHSNSAAP---ASSSPTSATLSTAA 103
Query: 276 PAPSSTAREIA 308
+ A ++A
Sbjct: 104 HPVHTNAAQVA 114
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 28.3 bits (60), Expect = 0.65
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 202 ITRTRHIPTKMRDPLHVPSQNHSRSRLLPPP 294
++ T+H T+++D +H S +H ++ L PP
Sbjct: 154 LSSTQHQLTELKDVMHSMSDSHEQNNALHPP 184
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 1.5
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +3
Query: 222 PHQDAGSPPCAV--TKSLPLPAPSSTAREIA 308
P AG PP V K+ P+PAPSS A ++
Sbjct: 1220 PTPSAGLPPVPVPTAKAPPVPAPSSEAPSVS 1250
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 26.6 bits (56), Expect = 2.0
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 217 HIPTKMRDPLHVPSQNHSRSRLLPPPPG 300
++P+KM D L +PS+ H+R LP PG
Sbjct: 496 YVPSKMMDELMIPSK-HNRYIDLPYIPG 522
>SPBC1773.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 3.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 324 RQPLLSRFPWRWRKEP 277
+ PLL ++ W WR EP
Sbjct: 156 KHPLLLKYQWYWRVEP 171
>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
oxidoreductase/ARE-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 4.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 255 VTKSLPLPAPSSTAREIARGGVDAALTALNRGLPVA 362
+TK +P PAP+ + A G++ T L GL A
Sbjct: 20 ITKEIPKPAPNGLVIKNAYAGLNYIDTYLRTGLYTA 55
>SPBC32H8.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 4.6
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -3
Query: 324 RQPLLSRFPWRWRKEP 277
+ PL+ ++ W WR EP
Sbjct: 212 KHPLMQQYEWYWRLEP 227
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 25.4 bits (53), Expect = 4.6
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +1
Query: 220 IPTKMRDPLHVPSQNHSRSRLLPPPPGKSREEGLTRPSRHSIAVYRWPRA 369
+PT +P+ P + + P PP RE+ R S S ++ P A
Sbjct: 257 VPTSNVEPVSQPQPSPDKIVSSPNPPSAKREKKKRRKSSMSSSITTPPTA 306
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 25.4 bits (53), Expect = 4.6
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 162 CSPLPVPFDRQSVHHANATHPHQDAGSPPCAVTKSLPLPAPSSTAR 299
C PV +RQ + H QD+G+P LP+P+S R
Sbjct: 271 CRQQPVDEERQDRVSKISKH-FQDSGTPVSEEVSPTRLPSPTSARR 315
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 25.0 bits (52), Expect = 6.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 413 VTLFPKRYYVIPLDEARGHR*TAIECREGRVNP 315
V LF K+Y ++P++E H AI C R+ P
Sbjct: 437 VDLFHKKYIIVPINET-FHWYLAIICNIDRLMP 468
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 25.0 bits (52), Expect = 6.1
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1
Query: 223 PTKMRDPLHVPSQNHSRSRLLPPPPGKSRE 312
P M +P S S + PPPPG+ E
Sbjct: 541 PNLMSEPTPTNSDEKSHALGFPPPPGQKIE 570
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 24.6 bits (51), Expect = 8.0
Identities = 10/45 (22%), Positives = 19/45 (42%)
Frame = +3
Query: 171 LPVPFDRQSVHHANATHPHQDAGSPPCAVTKSLPLPAPSSTAREI 305
LP P S +++ + H +PP +T + S+ A +
Sbjct: 166 LPQPISSSSTYNSTTSSYHNSTSTPPPTITSTKASTVTSTEATTV 210
>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 24.6 bits (51), Expect = 8.0
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +1
Query: 196 ASITRTRHIPTKMRDPLHVPSQNHSRSRLLPPPPGKSREEGLTRPSRHSIAVY 354
+S+ +P K P P + S LPP P SREE ++ P S+ Y
Sbjct: 147 SSVAALTPVPKKPSKPSK-PRKKVPVSHPLPPTP-PSREEHVSVPRESSLFTY 197
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 24.6 bits (51), Expect = 8.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 195 SVHHANATHPHQDAGSPPCAVTKSLPLPAPS 287
SVH ++ H ++GSP + +L +P S
Sbjct: 462 SVHRSSTNHSSTNSGSPNLSRRNNLAIPIAS 492
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 24.6 bits (51), Expect = 8.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 260 CDGTWRGSRILVGMCRVRVMDALSVKRNW 174
CDG W + G +V M A SV+RN+
Sbjct: 93 CDGKWLATSSEDGTVKVWDMRAPSVQRNY 121
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 24.6 bits (51), Expect = 8.0
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -3
Query: 210 SRDGRSVGQKELVGVNNLRFLSGSAHDH--AATHYYTRCETXLYVKVDVF 67
++ G S+G ++ L+ +SG + + +H+ CE ++++DVF
Sbjct: 484 TKTGGSLGMSRVIPKLLLQVMSGDMLNGCLSTSHFLKTCEKASHMRLDVF 533
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,905,956
Number of Sequences: 5004
Number of extensions: 39073
Number of successful extensions: 140
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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