Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_M21
         (485 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-2775|AAF55755.2|  183|Drosophila melanogaster CG15684-P...    31   1.1  
AE014134-2973|AAF53703.3| 1108|Drosophila melanogaster CG31753-P...    30   1.9  
BT029970-1|ABM92844.1|  446|Drosophila melanogaster IP18091p pro...    29   4.5  
AY166585-1|AAN86032.1|  990|Drosophila melanogaster HAMLET protein.    29   4.5  
AY118662-1|AAM50031.1|  642|Drosophila melanogaster SD10038p pro...    29   4.5  
AY061459-1|AAL29007.1|  143|Drosophila melanogaster LD41613p pro...    29   4.5  
AF289995-1|AAG02460.1|  642|Drosophila melanogaster thyroid horm...    29   4.5  
AF244916-1|AAF63336.1|  642|Drosophila melanogaster mediator tra...    29   4.5  
AE014297-2456|AAF55506.1|  642|Drosophila melanogaster CG7957-PA...    29   4.5  
AY061579-1|AAL29127.1|  613|Drosophila melanogaster SD02991p pro...    28   5.9  
AF247763-1|AAF74194.1|  613|Drosophila melanogaster SCAR protein.      28   5.9  
AE014134-2001|AAF53042.1|  613|Drosophila melanogaster CG4636-PA...    28   5.9  
AE013599-1994|AAM68540.1|  461|Drosophila melanogaster CG30475-P...    28   7.8  

>AE014297-2775|AAF55755.2|  183|Drosophila melanogaster CG15684-PA
           protein.
          Length = 183

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = -2

Query: 373 TKRVATGKPRLSAVRAASTPPLAISLAVEEGAGSGSDFVTAHGGDPAS 230
           T   A+G P  SA   AS+ P+ I+ A ++GA  G D   AH   P S
Sbjct: 18  TPSAASG-PAASAPAVASSTPIRINSAKQQGAAGGGD-TLAHPATPHS 63


>AE014134-2973|AAF53703.3| 1108|Drosophila melanogaster CG31753-PA
           protein.
          Length = 1108

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 186 DRQSVHHANATHPHQDAGSPPCAVTKSLPLPAPSSTAREIARGGVDA 326
           D++ +HH N  H       PP     +LPL   SS+A   +  G+DA
Sbjct: 78  DQELLHHPNHFHQQNQRQQPP---PPTLPLSVESSSAAAASVDGMDA 121



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +3

Query: 174 PVPFDRQSVH-HANATHPHQDAGSPPCAVTKSLPLPAPSSTAREIARGGVDAALTALN 344
           P P+  Q V+ H    H H     P  A T +   PAP   + E +     AA+ A++
Sbjct: 511 PGPYRNQHVNRHHQHPHQHPLPHQPHLAATATSTCPAPPRESSESSSSAAAAAVAAMS 568


>BT029970-1|ABM92844.1|  446|Drosophila melanogaster IP18091p
           protein.
          Length = 446

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 247 HVPSQNHSRSRLLPPPPGKSREEGLTRPSR 336
           H PSQ +SRS  + P P +       RPSR
Sbjct: 228 HSPSQQNSRSSSVEPKPARRSGRSPIRPSR 257


>AY166585-1|AAN86032.1|  990|Drosophila melanogaster HAMLET protein.
          Length = 990

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +3

Query: 174 PVPFDRQSVH-HANATHPHQDAGSPPCAVTKSLPLPAPSSTAREIARGGVDAALTALN 344
           P P+  Q V+ H    H H     P  A T +   PAP   + E +     AA+ A++
Sbjct: 393 PGPYRNQHVNRHHQHPHQHPLPHQPHLAATATSTCPAPPRESSESSSSAAAAAVAAMS 450


>AY118662-1|AAM50031.1|  642|Drosophila melanogaster SD10038p
           protein.
          Length = 642

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 192 QSVHHANATHPHQDAGSPPCAVTKSLPLPAPSSTARE 302
           + VH+ N+ HP     S P   TK   L  P +  RE
Sbjct: 372 REVHYKNSHHPFPHPASAPLGPTKKRMLAGPMAADRE 408


>AY061459-1|AAL29007.1|  143|Drosophila melanogaster LD41613p
           protein.
          Length = 143

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 156 RFLSGSAHDHAATHYYTRCETXLYVKVDVFML 61
           RF+  +AH H  TH +T  E  L+  + ++ L
Sbjct: 112 RFIHTTAHTHTHTHTHTCAELTLFTFIHIYCL 143


>AF289995-1|AAG02460.1|  642|Drosophila melanogaster thyroid hormone
           receptor-associatedprotein TRAP80 protein.
          Length = 642

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 192 QSVHHANATHPHQDAGSPPCAVTKSLPLPAPSSTARE 302
           + VH+ N+ HP     S P   TK   L  P +  RE
Sbjct: 372 REVHYKNSHHPFPHPASAPLGPTKKRMLAGPMAADRE 408


>AF244916-1|AAF63336.1|  642|Drosophila melanogaster mediator
           transcriptional cofactorTRAP80 protein.
          Length = 642

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 192 QSVHHANATHPHQDAGSPPCAVTKSLPLPAPSSTARE 302
           + VH+ N+ HP     S P   TK   L  P +  RE
Sbjct: 372 REVHYKNSHHPFPHPASAPLGPTKKRMLAGPMAADRE 408


>AE014297-2456|AAF55506.1|  642|Drosophila melanogaster CG7957-PA
           protein.
          Length = 642

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 192 QSVHHANATHPHQDAGSPPCAVTKSLPLPAPSSTARE 302
           + VH+ N+ HP     S P   TK   L  P +  RE
Sbjct: 372 REVHYKNSHHPFPHPASAPLGPTKKRMLAGPMAADRE 408


>AY061579-1|AAL29127.1|  613|Drosophila melanogaster SD02991p
           protein.
          Length = 613

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 247 HVPSQNHSRSRLLPPPPGKSREEGLTRPSRHSIAVYR-WPRASSNG 381
           H P  +   +   PPPP    EEG+   ++H++  ++  P++ +NG
Sbjct: 472 HSPKMSPPNAAPPPPPPPPPVEEGMGSGNQHTLRPHQILPKSLANG 517


>AF247763-1|AAF74194.1|  613|Drosophila melanogaster SCAR protein.
          Length = 613

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 247 HVPSQNHSRSRLLPPPPGKSREEGLTRPSRHSIAVYR-WPRASSNG 381
           H P  +   +   PPPP    EEG+   ++H++  ++  P++ +NG
Sbjct: 472 HSPKMSPPNAAPPPPPPPPPVEEGMGSGNQHTLRPHQILPKSLANG 517


>AE014134-2001|AAF53042.1|  613|Drosophila melanogaster CG4636-PA
           protein.
          Length = 613

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 247 HVPSQNHSRSRLLPPPPGKSREEGLTRPSRHSIAVYR-WPRASSNG 381
           H P  +   +   PPPP    EEG+   ++H++  ++  P++ +NG
Sbjct: 472 HSPKMSPPNAAPPPPPPPPPVEEGMGSGNQHTLRPHQILPKSLANG 517


>AE013599-1994|AAM68540.1|  461|Drosophila melanogaster CG30475-PA
           protein.
          Length = 461

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 105 GYNNG*PRDRGRTQTEIEGCSPLPVPFDRQSVHHANATHPHQ 230
           GY +    DRGR+   +  C+PLPV   +Q         P Q
Sbjct: 4   GYWSATTVDRGRSPRRLTQCAPLPVNIVQQEEEEEQPCLPQQ 45


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,375,123
Number of Sequences: 53049
Number of extensions: 541650
Number of successful extensions: 2385
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2375
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1705394754
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)