Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_M20
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    28   1.3  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    28   1.7  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    28   1.7  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    28   1.7  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    28   1.7  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    27   3.9  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    26   5.2  
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    26   6.8  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    26   6.8  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.8  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   9.0  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    25   9.0  

>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = -2

Query: 573 PSAEQKQSGRTHWLGSQSGALFGSSSTVQAFSSDSSLQSGLPLQNNSFSMQSPLPQANLP 394
           PS+    S  +    S S +   SSS+  + SS SS  S     ++S S  S +P  +  
Sbjct: 155 PSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSST 214

Query: 393 SGQIGSS 373
           S    SS
Sbjct: 215 SSSHSSS 221


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 152  YRRTTDQRSAHLQLRRHL--VASHEKYCIPANQ 60
            + RTT    AHLQ  R+L  +A  E+  IP NQ
Sbjct: 1226 FPRTTQDNRAHLQAARNLWALAVEERCIIPRNQ 1258


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 417 PLPQANLPSGQIGSSVFKIG 358
           P+P+A LPS  IG  VF IG
Sbjct: 380 PVPEARLPSMMIGCIVFPIG 399


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = -2

Query: 576 VPSAEQKQSGR---THWLGSQSGALFGSSSTVQAFSSDSSLQSGLPLQNNSFSMQSPLPQ 406
           +PS E+  S R   T      + +  G +  +   S D++LQS  PL+      +S +  
Sbjct: 498 LPSVEEDSSNRDKKTDIADLHTDSKVGIADVLSPISPDAALQSDGPLKKAKEPEESSITP 557

Query: 405 ANLPSGQIGSSV 370
              PS  +G S+
Sbjct: 558 TTPPSFNVGESL 569


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/55 (21%), Positives = 22/55 (40%)
 Frame = +2

Query: 452 KPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIPGGIEPNQVPQ 616
           +P   D     A     DP++ P+ +P+          A    +  G+ P +VP+
Sbjct: 243 RPHPSDTIPPGASMARSDPSQVPESNPSAAAAVAAAAVAAAANLTNGVNPPEVPR 297


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +1

Query: 13  RRHGSTRVSVSRCVISWFA 69
           R+ G+ RV++ +C+I+W A
Sbjct: 178 RQRGNGRVNIEKCLIAWMA 196


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -2

Query: 480 SSDSSLQSGLPLQNNSFSMQSPLPQANLPSGQIGSSVFKIGKTFRGF 340
           +S   LQ   P+Q+++F+  +P P   +P   I ++   +G ++  F
Sbjct: 271 ASADRLQKNHPVQSSNFNPYTPAPSITVPPNYIPNTAM-MGPSYSSF 316


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 447 LQNNSFSMQSPLPQANLPS-GQIGSSVFK 364
           L+ NSF +  P+P  ++PS   I S VFK
Sbjct: 305 LKKNSFCLYLPIPLTSIPSTPSIRSHVFK 333


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 464 KDESDENACTVELDPNRAPDCDPNQCVLPDCFCSAD 571
           K +SD     VELD     + DP+  VLP+   ++D
Sbjct: 295 KSKSDRRKRLVELDAENENENDPSDFVLPNGQSNSD 330


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 28/99 (28%), Positives = 42/99 (42%)
 Frame = -2

Query: 663 SMLSTFTAPLNVIVTI*GT*FGSIPPGIRVPSAEQKQSGRTHWLGSQSGALFGSSSTVQA 484
           SM+ T T+    I +   T   S       PS+   +S  +    S+S +   SSS   +
Sbjct: 135 SMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSS----SKSSSSSSSSSKSSS 190

Query: 483 FSSDSSLQSGLPLQNNSFSMQSPLPQANLPSGQIGSSVF 367
            SS SS  S     ++S S  S  P ++  S +  SS F
Sbjct: 191 SSSSSSKSSS---SSSSSSKSSASPSSSKSSSKFSSSSF 226


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 156 PPMNISVSPPKVTAAMSSGATRA*RTASPGSPQ 254
           P +++SV+   +T A  +G      T +PGSP+
Sbjct: 7   PNLDVSVTSSLITTAPVTGNAATISTFTPGSPE 39


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 513 LFGSSSTVQAFSSDSSLQSGLPLQNNSFSMQSPLPQANLPSGQIGS 376
           +FG + +V   +S SS  SG  L++   S ++   Q+ LP+  + S
Sbjct: 397 IFGMNQSVIGANSGSSNSSGSSLKSAPVSPRTAAAQSLLPNSVVSS 442


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,010,845
Number of Sequences: 5004
Number of extensions: 62405
Number of successful extensions: 221
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)