Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_M20
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583... 34 0.11
09_04_0426 - 17451731-17451886,17451974-17452079,17452289-174523... 31 0.77
03_06_0621 - 35147070-35148359,35148499-35148579,35148665-351487... 31 0.77
09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592... 30 2.3
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 29 4.1
06_03_1378 + 29705711-29706725,29707139-29707363,29707445-29707554 29 4.1
02_01_0567 - 4168164-4168250,4168672-4168828,4168951-4169090,417... 29 4.1
05_07_0305 - 29097478-29097598,29097766-29097866,29098136-290982... 29 5.4
03_03_0221 - 15557222-15557431,15557665-15557844 29 5.4
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244... 28 7.1
05_04_0252 - 19386942-19387048,19388332-19388947 28 9.4
>12_02_0133 - 14057469-14057497,14057516-14057581,14057770-14058363,
14058450-14058570,14058926-14059320,14059410-14059534,
14059646-14059876,14060012-14060484,14060587-14060693,
14060842-14061172,14061222-14061250,14061345-14061901,
14062170-14062255,14062344-14062406,14062646-14063001,
14063101-14063356
Length = 1272
Score = 34.3 bits (75), Expect = 0.11
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +2
Query: 428 EKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIPGGIEPNQ 607
+++L C+G D KD S+ AC +D N P C + + G R+ I N+
Sbjct: 1002 QQKLSCSGDEDTKDSSNSIACEAIIDVNTV----PVTCSVSSVYEIGKGIRV---INLNE 1054
Query: 608 VPQMVTITFNGA-VNVDNIDL 667
+V + N + VN +DL
Sbjct: 1055 ADNLVDVDINSSEVNSGTVDL 1075
>09_04_0426 -
17451731-17451886,17451974-17452079,17452289-17452387,
17452782-17452888,17452985-17453230,17454187-17454461,
17454834-17454886,17455163-17455455
Length = 444
Score = 31.5 bits (68), Expect = 0.77
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +2
Query: 425 IEKELFCNGKPDCK-DESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIPGGIEP 601
I E+ N +C+ SD AC+ +D + + DP P C + DG P I P
Sbjct: 232 ISDEVLANITKNCRFSPSDGKACSDAMDAFDSGNTDPYDIYGPVCINAPDGKFFPSRIVP 291
Query: 602 NQVP 613
P
Sbjct: 292 GYDP 295
>03_06_0621 -
35147070-35148359,35148499-35148579,35148665-35148741,
35148792-35149298,35149405-35150278
Length = 942
Score = 31.5 bits (68), Expect = 0.77
Identities = 29/111 (26%), Positives = 41/111 (36%), Gaps = 11/111 (9%)
Frame = +2
Query: 302 DWKTNVKNCDQIEKPRKVLPILKTDEPICPEGKL------ACGSGDCIE-----KELFCN 448
D +N N I L + DEP CP +L ACGS +CI+ C
Sbjct: 216 DLLSNKINASTIGASMAYLSTVIADEPNCPTARLDNKTQFACGSNNCIDVANGGYSCACP 275
Query: 449 GKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIPGGIEP 601
G D + + C E +P +C + C + P G+EP
Sbjct: 276 GNSDDGNPYLLDDCKQEFNPTPKKNCSRS--------CGSTNIPFPFGLEP 318
>09_04_0042 - 14055885-14056142,14057508-14057774,14057859-14059292,
14059378-14059539,14059642-14059768,14059869-14060200,
14060289-14061083,14061379-14061714,14061791-14062730,
14063338-14063588
Length = 1633
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = -2
Query: 540 HWLGSQSGALFGSSSTVQAFSSDSSLQSGLPLQNNSFSMQSPLPQANLPSGQIGSSVFKI 361
H + G + ST SS S +S L + +S + LP+ +LP G + S V I
Sbjct: 1045 HQAITNHGEMHQEPSTCPQCSSGSLRKSLLSREGHSMDTEIILPEIDLPVGMVDSFVHDI 1104
Query: 360 G 358
G
Sbjct: 1105 G 1105
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 29.1 bits (62), Expect = 4.1
Identities = 31/87 (35%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Frame = -2
Query: 603 FGSIPPG-IRVPSAEQKQSGRTHWLGSQSGALFGSSSTVQAFSSDSSLQSGLPLQNNSFS 427
FGS G PSA S T G S FGS+ST AF S+ G P ++ F
Sbjct: 79 FGSTSTGAFGQPSAPAFGSMSTGAFGQPSAPAFGSTST-GAFGQPSTQAFGTP-SSSPFG 136
Query: 426 MQSPLPQANLPSGQIG--SSVFKIGKT 352
+P A+ P+ G SS F G+T
Sbjct: 137 SSTPAFGAS-PAPVFGATSSTFGSGQT 162
>06_03_1378 + 29705711-29706725,29707139-29707363,29707445-29707554
Length = 449
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 177 SPPKVTAAMSSGATRA*RTASPGSPQCAAPAVS 275
+PP AA S+ A A TA+P + AAPA +
Sbjct: 353 APPAAPAAASTAAPAAASTAAPAAASTAAPAAA 385
>02_01_0567 -
4168164-4168250,4168672-4168828,4168951-4169090,
4170318-4170456,4170562-4170830,4170914-4171000,
4171259-4171327,4171427-4171455,4171544-4171950,
4172906-4172977,4173150-4173221,4173299-4173370,
4173454-4173519,4173717-4173785,4173866-4173995,
4174846-4174975
Length = 664
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 159 PMNISVSPPKVTAAMSSGATRA*RTASPGSPQCAAPAVSPSIST 290
P N S++P ++ +G+T +SP S +P+ SPS S+
Sbjct: 209 PFNTSIAPSASPSSTPTGSTPTQTPSSPSSSGTPSPSSSPSNSS 252
>05_07_0305 -
29097478-29097598,29097766-29097866,29098136-29098288,
29098404-29098542,29098649-29098719,29099022-29099333,
29099605-29099903,29100011-29100271,29100365-29100471,
29100588-29100739,29100816-29100970,29102946-29103141,
29103340-29103468,29103540-29103641,29103736-29103889,
29103970-29104058
Length = 846
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 473 SDENACTVELDPNRAPDCDPNQCVLP 550
S EN +++DP+ C P+ C+LP
Sbjct: 248 SRENELPLKVDPSNCKHCTPSYCLLP 273
>03_03_0221 - 15557222-15557431,15557665-15557844
Length = 129
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 126 RTLISCATVDPPMNISVSPPKVTAAMSSGATRA*RTASPGSPQCAAPA 269
R I+ A V+PP + S SPP+ + + + AT A P + A PA
Sbjct: 57 RPTIAIAVVEPPRSSSPSPPQSPSRVPA-ATVVVAVAEPAAAAIAEPA 103
>11_06_0294 +
22022630-22024006,22024109-22024234,22024319-22024423,
22024525-22024659,22024798-22024847,22026487-22026545,
22026819-22026928,22027941-22028174,22028278-22028377,
22028699-22028829,22029834-22029914,22029970-22030128
Length = 888
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/54 (22%), Positives = 30/54 (55%)
Frame = -1
Query: 736 DEKRSFNLTTVRIMTITVEYLFI*IDVVNIHSTVKCNSNHLRYLIWFNSTWDTC 575
+E +S + + V+Y+ I +++V+ T KC SN+ + +++ + + +C
Sbjct: 644 NELKSLFSALLEETNLAVKYIEIVLNMVHTSETAKCISNNSKNILYKTTLFSSC 697
>05_04_0252 - 19386942-19387048,19388332-19388947
Length = 240
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 189 VTAAMSSGATRA*RTASPGSPQCAAPAVSPSISTVKLVIG 308
+T ++GA A A+P SP AA A +P ++ VIG
Sbjct: 1 MTTGAAAGAAAA-AGAAPASPVAAAAAAAPEVAARDAVIG 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,143,459
Number of Sequences: 37544
Number of extensions: 437517
Number of successful extensions: 1517
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1515
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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