Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_M19
         (822 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0840 + 28570642-28570809,28570919-28571025,28571137-285712...    31   1.5  
06_03_1497 + 30585074-30586327                                         29   3.4  
08_01_0083 - 604175-605776                                             29   4.5  
07_01_0564 - 4183441-4183530,4183683-4183752,4183972-4184063,418...    29   4.5  
01_06_1273 + 35896320-35896400,35896548-35896736,35897817-358979...    29   4.5  
04_04_1397 - 33230416-33230742,33230852-33231007,33231130-332315...    29   5.9  
01_03_0284 - 14595643-14595663,14595978-14596018,14596379-145967...    29   5.9  

>04_04_0840 +
           28570642-28570809,28570919-28571025,28571137-28571238,
           28571786-28571981,28572691-28572819,28572869-28572895,
           28572896-28573090,28573182-28573292
          Length = 344

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +3

Query: 303 DDNSKVIIVEGPIAAGKTAFAASLADDLGMKHFPEANMDLHYIRPNGVDL 452
           D N   +I+ GP   GKT    SLA +L    + EA ++L+     G+D+
Sbjct: 47  DGNMPNLILSGPPGTGKTTSILSLAHELLGPSYREAVLELNASDDRGLDV 96


>06_03_1497 + 30585074-30586327
          Length = 417

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 312 SKVIIVEGPIAAGKTAFAASLADDL 386
           +KVI++ GP  AGKT  A  LA  L
Sbjct: 25  NKVIVISGPTGAGKTRLALDLAKRL 49


>08_01_0083 - 604175-605776
          Length = 533

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 237 FDYVNKDYTWLRSLIDRTTHRFDDNSKVIIVEGPIAAGKTAFAASLA 377
           FD +  D+ W R +  R+      + KV + EGP  AG  +    LA
Sbjct: 410 FDVLGNDFGWGRPVSVRSGGANKFDGKVTVYEGPDGAGSMSLEVCLA 456


>07_01_0564 -
           4183441-4183530,4183683-4183752,4183972-4184063,
           4184141-4184240,4184372-4184478,4184703-4184768,
           4184879-4185013,4185653-4185808,4186113-4186262,
           4186426-4186557,4187604-4187693
          Length = 395

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 315 KVIIVEGPIAAGKTAFAASLADDLGMK 395
           + +++ GP A GKTA A  ++ +LG K
Sbjct: 4   RALLLAGPPATGKTALALGISQELGSK 30


>01_06_1273 +
           35896320-35896400,35896548-35896736,35897817-35897948,
           35898093-35898242,35898564-35898719,35899462-35899596,
           35899706-35899771,35900016-35900122,35900258-35900357,
           35900436-35900527,35901026-35901095,35901229-35901318
          Length = 455

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 315 KVIIVEGPIAAGKTAFAASLADDLGMK 395
           + +++ GP A GKTA A  ++ +LG K
Sbjct: 64  RALLLAGPPATGKTALALGISQELGSK 90


>04_04_1397 -
           33230416-33230742,33230852-33231007,33231130-33231543,
           33234177-33234307,33235076-33235202,33235709-33236209,
           33237624-33237935,33238690-33238719
          Length = 665

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = -3

Query: 538 AAKRWLGF*LKLTWSKVLVSSGTWSSKDLKSTPFGR-I*CKSMLASGKCFIPKSSAREAA 362
           A KR     +K  W+K   + G W+  + K+T  GR    +++LAS + +  + S R+ A
Sbjct: 60  AGKRVTKKQVKWRWAKSRKNFGMWTWLESKATGLGRDTVSQAILASDEWWEIQESERKGA 119

Query: 361 KAVLPAAI 338
           KA   A +
Sbjct: 120 KAFKDAPL 127


>01_03_0284 -
           14595643-14595663,14595978-14596018,14596379-14596732,
           14597023-14597494,14597524-14600001
          Length = 1121

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = -2

Query: 632 LQHNSLASIEQVCQSINILTVPGHIHH--YLEVC-SQAMVRILIEINMV 495
           L++NSL ++   C     L  P H+HH  YL +  SQ MVR+  EI+++
Sbjct: 572 LKYNSLRALYCRCFMGTNLIQPKHLHHLRYLNLTYSQNMVRLPEEISIL 620


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,915,519
Number of Sequences: 37544
Number of extensions: 418430
Number of successful extensions: 923
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)