Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_M12
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 45 1e-05
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 43 4e-05
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 42 7e-05
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 41 2e-04
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 40 4e-04
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 38 0.002
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 36 0.005
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 35 0.014
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 34 0.019
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 34 0.019
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 33 0.032
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 33 0.056
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 32 0.075
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 31 0.17
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 31 0.23
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 30 0.30
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 29 0.53
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 29 0.70
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 28 1.2
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 27 2.1
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 27 3.7
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 27 3.7
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 26 4.9
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi... 26 4.9
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 4.9
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 26 4.9
SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr... 26 4.9
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 26 6.5
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 26 6.5
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 26 6.5
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 25 8.6
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 44.8 bits (101), Expect = 1e-05
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 186 CAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQSRKCAMCR 302
C++C++ P CGH+FC+ C+ G + +C +CR
Sbjct: 256 CSLCMEFIHCPAATECGHIFCWSCINGWTSKKSECPLCR 294
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 43.2 bits (97), Expect = 4e-05
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 183 DCAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQSRKCAMCRTEI 311
+C +C + Q P CGH +C+ C+ +S+ C CR ++
Sbjct: 84 ECPICTEALQRPFTTHCGHTYCYECLLNWLKESKSCPTCRQKL 126
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 42.3 bits (95), Expect = 7e-05
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +3
Query: 177 EYDCAVCLQKCQHPTKLSCGHVFCFLCV---KGVAHQSRKCAMCRTEI 311
+Y C +CL ++ + CGH+FC C+ G ++KC +CR ++
Sbjct: 203 DYKCVICLDSPENLSCTPCGHIFCNFCILSALGTTAATQKCPVCRRKV 250
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +3
Query: 177 EYDCAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQSRKCAMCRTEIP 314
E +C +C P CGH FC C+ QS +C CR +P
Sbjct: 166 ELECQICFGMLYDPVVSPCGHTFCGPCLMQALTQSPQCPTCRFGLP 211
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 39.9 bits (89), Expect = 4e-04
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +3
Query: 177 EYDCAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQSRK---CAMCRTE 308
+++CA+C P +L C HVFC C+ + Q +K C +CR +
Sbjct: 357 DFECAICSNVAYKPVRLGCSHVFCLHCL--IILQKQKVDFCPLCRAK 401
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 37.5 bits (83), Expect = 0.002
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 186 CAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQSRKCAMCRTEI 311
C +C + +CGH++C C++ S C MC+T++
Sbjct: 1092 CIICRDIIKQGFITTCGHLYCSFCLEAWLKHSSSCPMCKTKL 1133
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 36.3 bits (80), Expect = 0.005
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +3
Query: 186 CAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQSRKCAMCR 302
C +C + + P SC H FC C++ + C CR
Sbjct: 29 CLICHEYFRAPLITSCSHTFCSFCIRDYLREHPMCPACR 67
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 34.7 bits (76), Expect = 0.014
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 165 SHNMEYDCAVCLQKCQHPTKLS-CGH-VFCFLCVKGVAHQSRKCAMCRTEIPLDYF 326
S + DC +CLQK +LS CGH F + C+ QS C +C+ + ++
Sbjct: 14 SRYLRRDCVICLQKDGLRAQLSPCGHDQFDYSCICRWMDQSLTCPICKRHVDCVFY 69
>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 34.3 bits (75), Expect = 0.019
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 186 CAVCLQKCQHPTKLSCGHVFCFLCVK-GVAHQSRKCAMCRTEI 311
C +C +K ++P LS G VFC+ C++ + KC + E+
Sbjct: 257 CKICGEKIKNPAVLSTGFVFCYPCIQVWLQRHPFKCPVTNLEL 299
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 34.3 bits (75), Expect = 0.019
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Frame = +3
Query: 174 MEYDCAVCLQKC-----QHPTKLSCGHVFCFLCVKGVAHQSRKCAMCRTEIP 314
M+ C +C + TK+ CGH+F C++ C +CR E+P
Sbjct: 103 MDLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCRKEVP 154
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 33.5 bits (73), Expect = 0.032
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Frame = +3
Query: 177 EYDCAVCLQKCQHPT-KLSCGHVFCFLCVKGVAHQS----------RKCAMCRTEIPLDY 323
+++C+VCL C P + CGH C C+ + Q KC MCR I D
Sbjct: 603 DFNCSVCLDPCLAPVFIIPCGHFTCQECMSMLVGQKYGSSSTSTIIAKCPMCRGNIVQDS 662
Query: 324 FENPVLL 344
+ +L
Sbjct: 663 LVDATIL 669
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 32.7 bits (71), Expect = 0.056
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 216 PTKLSCGHVFCFLCVKGVAHQSRKCAMCRTEI 311
P +L CGH+ F C++ + + C +CR +
Sbjct: 323 PKRLPCGHILHFHCLRNWLERQQTCPICRRSV 354
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 32.3 bits (70), Expect = 0.075
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 186 CAVC-LQKCQHPTKLSCGHVFCFLCV-KGVAHQSRKCAMC 299
C+VC ++ + CGH FC+ C+ K + + R+C +C
Sbjct: 627 CSVCNFERWKDRIISLCGHGFCYQCIQKRIETRQRRCPIC 666
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 31.1 bits (67), Expect = 0.17
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = +3
Query: 171 NMEYDCAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQSRKCAMC 299
++ + C +C + + P +CGH FC C ++ C C
Sbjct: 249 DIPFVCLICKKDYRSPIATTCGHHFCEQCAITRYRKTPTCIQC 291
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 30.7 bits (66), Expect = 0.23
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 222 KLSCGHVFCFLCVKGVAHQSRKCAMCRTE-IPLDYFE 329
K+ CGH F C++ + C +CRTE + +D E
Sbjct: 53 KIPCGHYFHNHCLESWCRVANTCPLCRTEFLKVDVLE 89
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 30.3 bits (65), Expect = 0.30
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 186 CAVCLQKCQHPTKLS-CGHVFCFLCV 260
C CL++ ++S CGHV+CF C+
Sbjct: 214 CPFCLEEKPVAARMSRCGHVYCFSCL 239
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 29.5 bits (63), Expect = 0.53
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Frame = +3
Query: 177 EYDCAVCLQKCQ---HPTKLSCGHVFCFLCVKGVAHQSRKCAMCRTEI-PLDYFENPVLL 344
E +C +C++ + +L C H F C+K + CA+CR + P N
Sbjct: 393 EGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPVDPNSQQRNNTST 452
Query: 345 DKSN 356
D +N
Sbjct: 453 DSAN 456
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 29.1 bits (62), Expect = 0.70
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +3
Query: 186 CAVCLQKCQHPTKL--SCGHVFCFLCVKG-VAHQSRKCAMCRT 305
C+VC +KL +CGH FC C++ H++ C C T
Sbjct: 639 CSVC-NFSNWKSKLIPNCGHAFCSNCMEPFYEHKTSTCPQCET 680
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 186 CAVCLQKCQHPTKLSCGHVFCFLCV 260
C +C + Q + C H FC LCV
Sbjct: 711 CKICDEVAQDAIESRCHHTFCRLCV 735
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +3
Query: 231 CGHVFCFLCVKGVAHQSRKCAM--CRTEI 311
CGH+FC C K + ++ C + CR I
Sbjct: 167 CGHLFCSTCAKELRKKTVPCPVQHCRKRI 195
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 462 FLIQSCYAHHISTNHFFLHNTI 397
FLI+S Y H + N FF H T+
Sbjct: 263 FLIKSFYGH-VQANFFFFHETL 283
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 26.6 bits (56), Expect = 3.7
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Frame = +3
Query: 183 DCAVCLQK-CQHPTKLSCGHVFCFLCV-KGVAHQSRK------CAMCRTEIPLDYFENPV 338
+C +C + Q+P L+C H C C+ + + +Q R+ C CR P
Sbjct: 876 ECPICCNEPIQNPLLLNCKHACCGDCLSEHIQYQKRRNIIPPLCHTCRQPFNEQDVYKPF 935
Query: 339 LLDKSNLQYAANVDGVEGFQWYYEGR 416
+ + Q V E +W Y R
Sbjct: 936 FVKNNGTQSTLLVG--EEVKWKYWNR 959
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 526 STMYKVPASSKVHSDSPLLKAFSNSELLRSSY 431
S +Y++ HSD P +FS S+ LRS Y
Sbjct: 156 SPLYQI--DEPYHSDEPYAFSFSRSDTLRSLY 185
>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
Dma1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Frame = +3
Query: 183 DCAVCLQK---CQHPTKLSCGHVFCFLCVKGVAHQSR---KCAMCR 302
+C +CL CQ C H + + C++ ++S C +CR
Sbjct: 191 ECCICLMPVLPCQALFVAPCSHSYHYKCIRPTLNESHPYFSCFICR 236
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Frame = +3
Query: 186 CAVCLQKCQH------PTKLSCGHVFCFLCVKGVAH--QSRKCAMCRTEI 311
C +C+Q+ P CGH +C+ C+ + C +C+ I
Sbjct: 192 CMMCVQRGDERVAITTPYTTDCGHTYCYACIMSRLKLVNNVSCPICKHRI 241
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = +3
Query: 276 QSRKCAMCRTEIPLDYFEN---PVLLDK 350
QSR C +CR+++P D N P+L +K
Sbjct: 46 QSRACPLCRSKLPKDSRGNVLEPILSEK 73
>SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 235
Score = 26.2 bits (55), Expect = 4.9
Identities = 6/23 (26%), Positives = 17/23 (73%)
Frame = -1
Query: 240 HDRRIVLLDVDIFASKQHNHIPY 172
H+ +++ D+D+F+ +H+ +P+
Sbjct: 110 HEEMVIVRDIDVFSLCEHHLVPF 132
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 612 GIAGIRTNINQVPIEIKDETEDNVNENH 695
G G+R+ ++Q+P E D T D + H
Sbjct: 328 GEKGLRSELSQIPTENIDSTTDRFDNYH 355
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 537 LLGSQQCTKSQPVVKYTLILHY*RHFLIQSCYAHHISTN 421
L+ + QC+ VV LI+ HFL + C H I+++
Sbjct: 740 LIETLQCSLCMDVVAELLIIVPCGHFLCRECLTHVITSS 778
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 231 CGHVFCFLCVKGVAHQSRKCAMC 299
CGHV+C C K + R + C
Sbjct: 212 CGHVYCGSCAKVLKTSKRSQSKC 234
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 185 LCCLLAKMSTSN-KTILRSCFLFSLCEGCSSSKQKM 289
L L+ MS +N T + SC SL GC + K K+
Sbjct: 233 LMFLIRNMSKANIYTTILSCITISLLIGCRNLKSKL 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,072
Number of Sequences: 5004
Number of extensions: 61502
Number of successful extensions: 191
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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