Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_M12
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   4.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   4.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   7.0  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.2  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 411 LHNTIGILLLHQHWQHTED*TCPIEQGFQSS 319
           + N I ++LL  HW        P+ QGF S+
Sbjct: 279 IFNLICMMLLIGHWSGCLQFLVPMLQGFPSN 309


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 411 LHNTIGILLLHQHWQHTED*TCPIEQGFQSS 319
           + N I ++LL  HW        P+ QGF S+
Sbjct: 247 IFNLICMMLLIGHWSGCLQFLVPMLQGFPSN 277


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 19  HNNLCPXPAKVNLK 60
           H+ LCP P   +LK
Sbjct: 378 HSQLCPTPRSTHLK 391


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 399 WYYEGRNGWWKYDER 443
           WY+  RN  +K D+R
Sbjct: 282 WYWIDRNSAYKIDQR 296


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,533
Number of Sequences: 438
Number of extensions: 3761
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)