Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_M08
         (461 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0496 + 3939731-3939758,3940459-3942773                           31   0.60 
05_05_0051 + 21923402-21923763,21923861-21923951,21924048-219241...    27   5.6  
06_02_0008 - 10552066-10552116,10552224-10552323,10552394-105524...    27   7.3  
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408...    27   7.3  
06_01_1044 - 8208126-8208230,8208468-8208536,8208640-8208711           27   9.7  
05_07_0226 - 28515052-28515064,28515426-28515502,28515610-285157...    27   9.7  
05_01_0290 + 2270749-2271037,2272227-2272363,2272660-2272805,227...    27   9.7  
01_01_0824 + 6411899-6411931,6412001-6412210,6412302-6412451,641...    27   9.7  

>12_01_0496 + 3939731-3939758,3940459-3942773
          Length = 780

 Score = 30.7 bits (66), Expect = 0.60
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 235 WQV*MRAPT-QAVLVRYGSSQVLTQGSSVQWAFSGHPXSVVLASRAXTATIR 83
           WQ+   A   +A L+  G+  V  QG S+ W    HP + +L  +  TAT +
Sbjct: 101 WQISSSAEAVRAELMDSGNLVVKDQGGSILWQSFDHPTNTLLPMQPVTATAK 152


>05_05_0051 +
           21923402-21923763,21923861-21923951,21924048-21924196,
           21924279-21924522,21924664-21924768,21924842-21925024,
           21925118-21925319,21925896-21926372,21926680-21926771,
           21927265-21927444
          Length = 694

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 147 HWTDDPCVRTCDDP 188
           HWT  PCV  C DP
Sbjct: 143 HWTFAPCVAVCRDP 156


>06_02_0008 -
           10552066-10552116,10552224-10552323,10552394-10552449,
           10553950-10557180
          Length = 1145

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 84  LIVAVXALEASTTEXGCPENAHWTDDPCVRTCDDPYL 194
           L++AV A+  +      P    WTDD  V    DP L
Sbjct: 101 LLLAVLAVSVTYNAGLSPPGGFWTDDSPVHHAGDPLL 137


>05_01_0490 +
           4083768-4083775,4083845-4084336,4084441-4084522,
           4086671-4087357,4087555-4087813,4088435-4088558,
           4089474-4089564
          Length = 580

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 191 VRVVAGPHAGVISPMGIFRASXFGSAGLES 102
           +R + GP+ G+     +FR S FG AG ES
Sbjct: 247 MRRMFGPNGGIGIAEMLFRTSIFGLAGAES 276


>06_01_1044 - 8208126-8208230,8208468-8208536,8208640-8208711
          Length = 81

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 138 ENAHWTDDPCVRTCDDPYLTNTACVGALIQ 227
           EN HW  D  +  C+     NTA  G++ Q
Sbjct: 47  ENIHWLCDLVISMCNTIRRENTALAGSICQ 76


>05_07_0226 -
           28515052-28515064,28515426-28515502,28515610-28515767,
           28515852-28515937,28516048-28516351,28516410-28517490
          Length = 572

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 152 PMGIFRASXFGSAGLESXHGDNQEH 78
           P    RAS FG+A L S H  +++H
Sbjct: 264 PNSALRASSFGAADLFSLHSSSRQH 288


>05_01_0290 +
           2270749-2271037,2272227-2272363,2272660-2272805,
           2272853-2272877
          Length = 198

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 208 QAVLVRYGSSQVLTQGSSVQWAFSGHP 128
           QA +     +++LTQ  SV WAFS  P
Sbjct: 156 QAAIKALDGTELLTQIISVDWAFSNGP 182


>01_01_0824 +
           6411899-6411931,6412001-6412210,6412302-6412451,
           6413787-6413969,6417705-6417779,6417959-6418102,
           6418233-6418418,6418515-6418694
          Length = 386

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 202 VLVRYGSSQVLTQGSSVQWAFSGHPXSVV 116
           +LVRY +   + + +SVQW  +G P  +V
Sbjct: 192 MLVRYDAGYTIDEVNSVQWKCNGTPKVLV 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,995,335
Number of Sequences: 37544
Number of extensions: 128833
Number of successful extensions: 322
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)