Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_M08
         (461 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    31   0.008
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    31   0.008
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   4.9  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   8.5  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   8.5  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 30.7 bits (66), Expect = 0.008
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = +3

Query: 132 CPENAHWT--DDPCVRTCDDPYLTNTACVGALIQTCHCNDGLVFNADRKCVPISDC 293
           CP N  ++  D  C R C +  +    C+      C C  G + N  + CVP S C
Sbjct: 37  CPSNEIFSRCDGRCQRFCPN-VVPKPLCIKICAPGCVCRLGYLRNKKKVCVPRSKC 91


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 30.7 bits (66), Expect = 0.008
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = +3

Query: 132 CPENAHWT--DDPCVRTCDDPYLTNTACVGALIQTCHCNDGLVFNADRKCVPISDC 293
           CP N  ++  D  C R C +  +    C+      C C  G + N  + CVP S C
Sbjct: 37  CPSNEIFSRCDGRCQRFCPN-VVPKPLCIKICAPGCVCRLGYLRNKKKVCVPRSKC 91


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 129 GCPENAHWTDDPCVR 173
           G  +  H+  DPCVR
Sbjct: 708 GALDRLHYETDPCVR 722


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 270 KCVPISDC*NVITIYNL 320
           KC+P S   N   IYNL
Sbjct: 113 KCLPTSGSDNCNKIYNL 129


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 270 KCVPISDC*NVITIYNL 320
           KC+P S   N   IYNL
Sbjct: 113 KCLPTSGSDNCNKIYNL 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,909
Number of Sequences: 438
Number of extensions: 1175
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)