Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_M06
         (745 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    32   0.006
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       26   0.28 
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    26   0.28 
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    23   2.0  
AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation facto...    22   6.0  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 31.9 bits (69), Expect = 0.006
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = -3

Query: 350 IFSIHMVRHVAVYRFYCLYLKFTIH 276
           IF++H++  + +Y F+C ++ FT+H
Sbjct: 155 IFTVHLLFLLCIYHFFCAFIIFTMH 179



 Score = 28.3 bits (60), Expect = 0.069
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = -3

Query: 347 FSIHMVRHVAVYRFYCLYLKFTIH---YCI 267
           F++H++    +Y FY  ++ FTIH   YC+
Sbjct: 202 FTLHLLFLPCIYYFYSAFIIFTIHLLFYCV 231



 Score = 25.8 bits (54), Expect = 0.37
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 323 VAVYRFYCLYLKFTIH 276
           + +Y FYC ++ FT+H
Sbjct: 144 LCIYYFYCAFIIFTVH 159



 Score = 23.0 bits (47), Expect = 2.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 308 FYCLYLKFTIHYCI 267
           FYC ++ FT+H+ +
Sbjct: 85  FYCPFIIFTVHFLL 98


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 362 VRCAIFSIHMVRHVAVYRFYCLYLKFTIHYCINL 261
           V  ++ + HM  H  VYR+ C    +   YC +L
Sbjct: 269 VNKSMLNSHMKSHSNVYRYSCRDCSYATKYCHSL 302


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 362 VRCAIFSIHMVRHVAVYRFYCLYLKFTIHYCINL 261
           V  ++ + HM  H  VYR+ C    +   YC +L
Sbjct: 27  VNKSMLNSHMKSHSNVYRYSCRDCSYATKYCHSL 60


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +3

Query: 342 AKNGTSNSARKFFTLKDMPHIVRALDRNQKVHSDILNVIGNTPLVKLSKLPKD 500
           AK    N+ +   TLK +  ++   D  +    +I+ V G+T + K+ +L KD
Sbjct: 127 AKFEELNNDQFLKTLKPVKKVLEDADMTKDQIDEIVLVGGSTRIPKIQQLIKD 179


>AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation factor
           1-alpha protein.
          Length = 56

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 600 QKGILKPGKSVIVEPTSGNTGI 665
           + G+LKPG  V+  P +  T +
Sbjct: 19  ETGVLKPGMVVVFAPANITTEV 40


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,432
Number of Sequences: 336
Number of extensions: 4220
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)