Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_M06
(745 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po... 105 9e-24
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo... 84 2e-17
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb... 39 7e-04
SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase ... 29 0.53
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces... 29 0.70
SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz... 28 1.6
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce... 27 2.8
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 27 3.7
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 27 3.7
SPAC23A1.03 |apt1||adenine phosphoribosyltransferase |Schizosacc... 26 6.5
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 26 6.5
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 25 8.6
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 25 8.6
>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 105 bits (251), Expect = 9e-24
Identities = 53/102 (51%), Positives = 66/102 (64%)
Frame = +3
Query: 438 SDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGGSVKDRIAYRMFLDAEQKGILK 617
S + IG TPL++L+ L + G C + AK EF NPGGSVKDR AY + DAE+KG L
Sbjct: 15 SGFIGAIGRTPLIRLNTLSNETG--CNILAKAEFQNPGGSVKDRAAYYVVRDAEKKGKLS 72
Query: 618 PGKSVIVEPTSGNTGIGLALAAAVRGYRCIIVLPEKMSDEKV 743
G IVE T+GNTGIGLA A RGY+C+I +P S K+
Sbjct: 73 RG-GTIVEGTAGNTGIGLAHIARARGYKCVIYMPNTQSQAKI 113
>SPAC3A12.17c |cys12|cys1b|cysteine synthase
Cys12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 84.2 bits (199), Expect = 2e-17
Identities = 50/139 (35%), Positives = 75/139 (53%), Gaps = 5/139 (3%)
Frame = +3
Query: 339 DAKNGTSNSARKFFTLKDMPHIVRALDRNQKVHSDILN----VIGNTPLVKLSKLPKDEG 506
D +G + A + L+ + +R + DI+N +IGNT +V++ L + G
Sbjct: 7 DLASGIAMGAVFMYLLRRLYESLRVKSSADSLEEDIVNGVEGLIGNTKMVRIKSLSQATG 66
Query: 507 LKCEMYAKCEFLNPGGSVKDRIAYRMFLDAEQKGILKPGKS-VIVEPTSGNTGIGLALAA 683
C++ AK EFLNPG S KDR+A +M AE+ G L P +S + E T+G+TGI +A+
Sbjct: 67 --CDILAKAEFLNPGNSPKDRVALQMIRTAEENGDLVPYQSNAVYEGTAGSTGISIAMLC 124
Query: 684 AVRGYRCIIVLPEKMSDEK 740
GY I +P S EK
Sbjct: 125 CSLGYDSRIYMPSDQSKEK 143
>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 39.1 bits (87), Expect = 7e-04
Identities = 28/101 (27%), Positives = 50/101 (49%)
Frame = +3
Query: 438 SDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGGSVKDRIAYRMFLDAEQKGILK 617
S++ VI TPL K + + G+ +Y K E L P S K R A+ +++ +
Sbjct: 105 SNVYEVIKETPLTKGVVISESTGVP--VYLKREDLTPVFSFKIRGAHNKMASLDKQSL-- 160
Query: 618 PGKSVIVEPTSGNTGIGLALAAAVRGYRCIIVLPEKMSDEK 740
K+ ++ ++GN G+A +A G + IV+P+ + K
Sbjct: 161 --KNGVIACSAGNHAQGVAYSARTLGVKATIVMPQNTPEIK 199
>SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 323
Score = 29.5 bits (63), Expect = 0.53
Identities = 25/93 (26%), Positives = 45/93 (48%)
Frame = +3
Query: 465 TPLVKLSKLPKDEGLKCEMYAKCEFLNPGGSVKDRIAYRMFLDAEQKGILKPGKSVIVEP 644
TP++ S + K+ E++ KCE G+ K +R L+A + K+ ++
Sbjct: 27 TPVLTSSTVNKE--FVAEVFFKCENFQKMGAFK----FRGALNALSQLNEAQRKAGVLTF 80
Query: 645 TSGNTGIGLALAAAVRGYRCIIVLPEKMSDEKV 743
+SGN +AL+A + G I++P + KV
Sbjct: 81 SSGNHAQAIALSAKILGIPAKIIMPLDAPEAKV 113
>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 29.1 bits (62), Expect = 0.70
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +3
Query: 69 VKFLSFKRKHSYYILPG*STLTHCELLQKNNLYRSI*F*FN*NCIFYQ 212
++ + +++K+ YYI S L HC N+ RS + F+ + +F+Q
Sbjct: 312 IRNVGYEKKNLYYISSAFSNLLHCRYFNCNDRLRSFYYRFS-SWLFHQ 358
>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 338
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 459 GNTPLVKLSKLPKDEGLKCEMYAKCEFLNPG 551
G TP+ + +L K G K E++AK E N G
Sbjct: 14 GPTPITSMKRLSKTLGGKVEIFAKREDCNSG 44
>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/63 (23%), Positives = 32/63 (50%)
Frame = +3
Query: 315 NSNMSNHVDAKNGTSNSARKFFTLKDMPHIVRALDRNQKVHSDILNVIGNTPLVKLSKLP 494
N + + H+ + T+ +++K L + H V + + + + D+L L+KL LP
Sbjct: 77 NRHAAAHIPQR--TTKTSQKLVLLPEN-HAVNSFNEEESNYEDLLTPSDAYNLIKLENLP 133
Query: 495 KDE 503
+D+
Sbjct: 134 RDK 136
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 312 INSNMSNHVDAKNGTSNSARKFFTLKDMP 398
INSN+SN +D+ + ++SA F D+P
Sbjct: 157 INSNISNSLDSVSQHNSSADSLFVNGDVP 185
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 315 NSNMSNHVDAKNGTSNSARKFFT 383
N+N SN+ + NGT +A+ FFT
Sbjct: 321 NNNNSNNNNGNNGTVPNAKTFFT 343
>SPAC23A1.03 |apt1||adenine phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.8 bits (54), Expect = 6.5
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +3
Query: 594 AEQKGILKPGKSVIVEPTSGNTGIGLALAA 683
A QKG +KPG+ V++ TG G ALAA
Sbjct: 110 AIQKGTIKPGQRVLIVDDILATG-GTALAA 138
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +3
Query: 480 LSKLPK--DEGLKCEMYAKCEFLNPGGSVKDRIAYR 581
LS++ K D GLK + AK + NP +++D + YR
Sbjct: 332 LSEMDKGSDVGLKNCIRAKISYENPNKAMRDPVIYR 367
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 321 NMSNHVDAKNGTSNSARKFFTLKDMPH 401
N SN++DA T S +T KD P+
Sbjct: 481 NTSNYMDATKDTEISYELLYTSKDSPY 507
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 685 AAASASPIPVLPDVGSTMTDLPGFKIP 605
AA S P+P +P VG+T T +P IP
Sbjct: 232 AATSIPPVPNVPLVGAT-TAVPPLSIP 257
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,067,528
Number of Sequences: 5004
Number of extensions: 65283
Number of successful extensions: 147
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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