Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_M06
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...   175   3e-46
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    24   1.7  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              22   7.0  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   7.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   7.0  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.2  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   9.2  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.2  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score =  175 bits (427), Expect = 3e-46
 Identities = 82/117 (70%), Positives = 96/117 (82%), Gaps = 1/117 (0%)
 Frame = +3

Query: 396 PHIVRALDRNQ-KVHSDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGGSVKDRI 572
           PH  R  + +  K+  DIL  IG TPL+KL+ +PK  G+KCE+YAKCEFLNPGGSVKDRI
Sbjct: 22  PHTCRTKNGDYTKIMPDILTAIGQTPLIKLNNIPKSYGIKCEIYAKCEFLNPGGSVKDRI 81

Query: 573 AYRMFLDAEQKGILKPGKSVIVEPTSGNTGIGLALAAAVRGYRCIIVLPEKMSDEKV 743
           AYRM  DAE KG+LKPG   I+EPTSGNTGIGLA+AAAVRGY+CIIV+PEKMSDEK+
Sbjct: 82  AYRMIQDAEDKGLLKPG-CTIIEPTSGNTGIGLAMAAAVRGYKCIIVMPEKMSDEKI 137


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -3

Query: 362 VRCAIFSIHMVRHVAVYRFYCLYLKFTIHYCINL 261
           V  ++ + H+  H  VY++ C    +   YC +L
Sbjct: 27  VNKSMLNSHLKSHSNVYQYRCANCTYATKYCHSL 60


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/53 (22%), Positives = 20/53 (37%)
 Frame = +3

Query: 426 QKVHSDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGGSVKDRIAYRM 584
           +K   +    I +    +  + P+DE LKC      E  N       +I Y +
Sbjct: 41  KKCIGETKTTIEDVEATEYGEFPEDEKLKCYFNCVLEKFNVMDKKNGKIRYNL 93


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 335 MVRHVAVYRFYCLYLKFTIHYCINL 261
           M R +A +R + LYL   +  CI++
Sbjct: 110 MCRIMAFFRMFGLYLSSFVLVCISM 134


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -1

Query: 736 SSDIFSGNTIMHLYPLTAAASASPIPVLPDVGSTMTDLPG 617
           S  +    T  HL   +  A+A+P P    VGS +    G
Sbjct: 29  SLTLVKAETPEHLAGTSTTAAATPTPPSVPVGSAVAGTAG 68


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 20  THTQYYKYPTSINLSF 67
           TH  YY  P+S NL +
Sbjct: 261 THNLYYNSPSSENLYY 276


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 518 NVCKMRVPQPWRIRQRPHSLPHVSGCRTEGYFE 616
           NV   R+P  +R R  PH +    G  + G+ E
Sbjct: 253 NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVE 285


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 278 EL*ILNTSNKNDKQQHVEPCGC 343
           EL ++ +  K+D+ +  EP GC
Sbjct: 600 ELFVMVSDYKDDRVEQNEPIGC 621


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,808
Number of Sequences: 438
Number of extensions: 4635
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)