Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_M05
(478 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical pr... 86 1e-17
U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like... 33 0.14
AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3 ... 33 0.14
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p... 32 0.19
L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore nu... 28 3.0
U00068-1|AAA50745.1| 85|Caenorhabditis elegans Hypothetical pr... 28 4.0
U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like pr... 27 9.2
U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like pr... 27 9.2
U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like pr... 27 9.2
>Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical
protein C04F12.4 protein.
Length = 135
Score = 86.2 bits (204), Expect = 1e-17
Identities = 45/109 (41%), Positives = 64/109 (58%)
Frame = +1
Query: 1 KLVSVVXVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTAPTRLVRKAWTDAKL 180
KL ++V VID R +DGP S V R L L LTKF LK T+ V+ A+ AK+
Sbjct: 23 KLAAIVNVIDGNRVQIDGPSSDVTRTVRNLKDLQLTKFVLKLRVGQRTKGVKAAFDAAKV 82
Query: 181 NEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLK 327
E + ++QWA+K+A + RA++TD++R+KL A+ RNR LK
Sbjct: 83 TENFQKTQWAKKIAQRAIRAKLTDFERYKLMKAKQMRNRIVRVELAKLK 131
>U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like
protein 3 protein.
Length = 208
Score = 32.7 bits (71), Expect = 0.14
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +1
Query: 109 KFRL--KYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAAR 282
+FR+ K A A + +KA T EK + AQK A EK+A+ T + K TA +
Sbjct: 108 RFRVTEKKAAAAKKPVAKKAAT----GEKKAKKPVAQKAATGEKKAKKTTATKTKKTADK 163
Query: 283 VKRNRARTAVFKSLKVKAARA 345
VK+ ++ + K K A++
Sbjct: 164 VKKVKSPKKIAKPTAKKVAKS 184
>AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3
protein.
Length = 208
Score = 32.7 bits (71), Expect = 0.14
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +1
Query: 109 KFRL--KYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAAR 282
+FR+ K A A + +KA T EK + AQK A EK+A+ T + K TA +
Sbjct: 108 RFRVTEKKAAAAKKPVAKKAAT----GEKKAKKPVAQKAATGEKKAKKTTATKTKKTADK 163
Query: 283 VKRNRARTAVFKSLKVKAARA 345
VK+ ++ + K K A++
Sbjct: 164 VKKVKSPKKIAKPTAKKVAKS 184
>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
protein Y49E10.19 protein.
Length = 1159
Score = 32.3 bits (70), Expect = 0.19
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +1
Query: 196 ESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAAR 342
E+QWA ++ RA +T+YDR K R+ T L V AR
Sbjct: 807 EAQWAMLRHVEKHRALLTEYDRLKRDGPRIIDGPRGTITVSQLSVNMAR 855
>L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore null
protein 1 protein.
Length = 1010
Score = 28.3 bits (60), Expect = 3.0
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = -2
Query: 372 RDIFLAEGTSTRSLHLQALEYGSPGTVPLNSCSC*LEP 259
RDI LA TS RS HL + + +PGT L S + L P
Sbjct: 746 RDI-LAMNTSVRSPHLNSSKTAAPGTPSLMSQNVQLPP 782
>U00068-1|AAA50745.1| 85|Caenorhabditis elegans Hypothetical
protein W04D12.1 protein.
Length = 85
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 181 NEKWTESQWAQKLANKEKRAQMTDYDRFK 267
N KW A K+A KEK+ +M D ++ K
Sbjct: 43 NRKWKRIDSAVKVAKKEKKKKMKDEEKKK 71
>U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like
protein protein 4,isoform c protein.
Length = 1576
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +1
Query: 73 RQQIRLNQLHLTKFRLKYAFTAPTR--LVRKAWTDAKLNEKWTESQWAQKLANKEKRAQM 246
R+++ ++ +T+ + ++A T R L A++N+ W E NKE++ +
Sbjct: 400 REEVETLRMQITQTKKEHAETEELRERLAESERLVAQMNKSWEERLKETDTLNKERQKDL 459
Query: 247 TD 252
T+
Sbjct: 460 TE 461
>U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like
protein protein 4,isoform b protein.
Length = 1610
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +1
Query: 73 RQQIRLNQLHLTKFRLKYAFTAPTR--LVRKAWTDAKLNEKWTESQWAQKLANKEKRAQM 246
R+++ ++ +T+ + ++A T R L A++N+ W E NKE++ +
Sbjct: 400 REEVETLRMQITQTKKEHAETEELRERLAESERLVAQMNKSWEERLKETDTLNKERQKDL 459
Query: 247 TD 252
T+
Sbjct: 460 TE 461
>U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like
protein protein 4,isoform a protein.
Length = 1595
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +1
Query: 73 RQQIRLNQLHLTKFRLKYAFTAPTR--LVRKAWTDAKLNEKWTESQWAQKLANKEKRAQM 246
R+++ ++ +T+ + ++A T R L A++N+ W E NKE++ +
Sbjct: 400 REEVETLRMQITQTKKEHAETEELRERLAESERLVAQMNKSWEERLKETDTLNKERQKDL 459
Query: 247 TD 252
T+
Sbjct: 460 TE 461
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,427,000
Number of Sequences: 27780
Number of extensions: 203612
Number of successful extensions: 637
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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