Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_M04
(538 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0313 - 19475203-19475244,19475883-19475976,19476933-194771... 95 2e-20
05_06_0103 + 25597531-25597608,25597692-25597892,25598599-255987... 77 7e-15
01_01_0826 + 6431621-6431917,6432356-6432505,6432614-6432796,643... 77 1e-14
01_01_0824 + 6411899-6411931,6412001-6412210,6412302-6412451,641... 54 5e-08
04_04_1546 - 34301905-34302093,34302549-34302911,34303031-343034... 44 8e-05
02_01_0558 + 4109929-4110042,4110989-4111097,4111404-4111563,411... 30 1.3
01_04_0136 + 16506747-16506982,16507128-16507728,16510443-165108... 30 1.3
04_04_1586 - 34621945-34623366 29 3.1
02_05_0230 + 27029725-27030871,27030995-27031113,27031225-270313... 28 5.4
05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-22... 27 9.5
01_06_1608 - 38612754-38616947,38617030-38617095 27 9.5
>06_03_0313 -
19475203-19475244,19475883-19475976,19476933-19477129,
19477254-19477394,19477873-19478073,19478775-19478894,
19479677-19479859,19479946-19480095,19481305-19481508,
19481545-19481547
Length = 444
Score = 95.5 bits (227), Expect = 2e-20
Identities = 57/145 (39%), Positives = 84/145 (57%), Gaps = 1/145 (0%)
Frame = +3
Query: 105 LVILAQGAEEMETVITVDMLRRGGVTVTLAGLEGSSPVLCSRQVTLVPDKSLTEALAEKQ 284
LV +A G EEME + +D+LRR V +A LE + ++ SR+V +V D L +AL KQ
Sbjct: 222 LVPIANGTEEMEATMIIDILRRAKANVVVASLEETLEIVASRKVKMVADVLLDDAL--KQ 279
Query: 285 QYDAVILPGGLEGSDSLSKSEK-VGALLKDHEDNGKXXXXXXXXXXXXXXHGVARGRRVT 461
QYD ++LPGGL G+ + +KS+K +G + K E N HG+ +G++ T
Sbjct: 280 QYDLILLPGGLGGAQAYAKSDKLIGLIKKQAEANKLYGAICASPAIALEPHGLLKGKKAT 339
Query: 462 SYPSTRDKLSAGDYTYVEGERVVVD 536
S+P +KLS D + + RVVVD
Sbjct: 340 SFPGMWNKLS--DQSECK-NRVVVD 361
Score = 72.9 bits (171), Expect = 1e-13
Identities = 53/146 (36%), Positives = 78/146 (53%), Gaps = 2/146 (1%)
Frame = +3
Query: 105 LVILAQGAEEMETVITVDMLRRGGVTVTLAGLE-GSSPVLCSRQVTLVPDKSLTEALAEK 281
LV +A G E ME VITVD+LRR G V++A ++ GS+ V + V L D +L + LA+
Sbjct: 3 LVPIASGTEPMEAVITVDVLRRAGADVSVASVDPGSAQVGGAWGVKLAAD-ALLDDLAD- 60
Query: 282 QQYDAVILPGGLEGSDSLSKSEKVGALLKDHEDNGKXXXXXXXXXXXXXXH-GVARGRRV 458
++D + LPGG+ GS +L + + ++K H GK G+ G +
Sbjct: 61 AEFDLISLPGGMPGSSNLRDCKLLENMVKKHAGKGKLYAAICAAPAVALGSWGLLNGLKA 120
Query: 459 TSYPSTRDKLSAGDYTYVEGERVVVD 536
T YPS DKL + + VE RV +D
Sbjct: 121 TCYPSFMDKLPS-EVNAVE-SRVQID 144
>05_06_0103 +
25597531-25597608,25597692-25597892,25598599-25598748,
25598906-25599019,25599699-25599776,25600008-25600208,
25601312-25601399,25601432-25601742
Length = 406
Score = 77.4 bits (182), Expect = 7e-15
Identities = 38/95 (40%), Positives = 63/95 (66%)
Frame = +3
Query: 105 LVILAQGAEEMETVITVDMLRRGGVTVTLAGLEGSSPVLCSRQVTLVPDKSLTEALAEKQ 284
L+ +A G+EEME ++ D+LRR V V LA +E S+ ++ S+++ +V DK +++A A
Sbjct: 209 LIPIANGSEEMEIIMLTDVLRRANVNVVLASVEKSTSIVGSQRMRIVADKCISDASA--L 266
Query: 285 QYDAVILPGGLEGSDSLSKSEKVGALLKDHEDNGK 389
+YD +ILPGG G++ L KS + LLK+ + G+
Sbjct: 267 EYDLIILPGGPAGAERLHKSSVLKKLLKEQKQTGR 301
Score = 63.3 bits (147), Expect = 1e-10
Identities = 41/100 (41%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Frame = +3
Query: 48 LKTLANYRAFKSRTMSKSALVI-LAQGAEEMETVITVDMLRRGGVTVTLAGLEGSSPVLC 224
L A+ A S T +K +++ +A G EEME VI +LRR G VTLA +E V
Sbjct: 8 LSAAASTAASSSTTPAKKKVLLPIAMGTEEMEAVILAGVLRRAGADVTLASVEDGLEVEA 67
Query: 225 SRQVTLVPDKSLTEALAEKQQYDAVILPGGLEGSDSLSKS 344
SR +V DK + A Q +D V LPGG+ GS L S
Sbjct: 68 SRGSHIVADKRI--AACADQVFDLVALPGGMPGSVRLRDS 105
>01_01_0826 +
6431621-6431917,6432356-6432505,6432614-6432796,
6433305-6433385,6433548-6433586,6433646-6433849,
6433933-6434073,6434270-6434437,6434498-6434518
Length = 427
Score = 76.6 bits (180), Expect = 1e-14
Identities = 50/146 (34%), Positives = 79/146 (54%), Gaps = 2/146 (1%)
Frame = +3
Query: 105 LVILAQGAEEMETVITVDMLRRGGVTVTLAGLEGSSPVLCSR-QVTLVPDKSLTEALAEK 281
LV +A G+EEME + +D+LRR G VT+A +E V+ R + L+ D + E A K
Sbjct: 252 LVPVANGSEEMEALNLIDILRRAGANVTVASVEDKLQVVTRRHKFNLIADIMVEE--AAK 309
Query: 282 QQYDAVILPGGLEGSDSLSKSEKVGALLKDH-EDNGKXXXXXXXXXXXXXXHGVARGRRV 458
+++D +++PGGL G+ LS ++ + LLK E N HG+ +G++
Sbjct: 310 REFDLIVMPGGLPGAQKLSSTKVLVDLLKKQAESNKPYGAICASPAYVLEPHGLLKGKKA 369
Query: 459 TSYPSTRDKLSAGDYTYVEGERVVVD 536
TS+P L+ D + + RVVVD
Sbjct: 370 TSFPPMAHLLT--DQSACD-SRVVVD 392
>01_01_0824 +
6411899-6411931,6412001-6412210,6412302-6412451,
6413787-6413969,6417705-6417779,6417959-6418102,
6418233-6418418,6418515-6418694
Length = 386
Score = 54.4 bits (125), Expect = 5e-08
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Frame = +3
Query: 93 SKSALVILAQGAEEMETVITVDMLRRGGVTVTLAGLE-GSSPVLCSRQVTLVPDKSLTEA 269
+K LV + G E +E + +D+LRR G VT+A + G V V +V D +
Sbjct: 9 TKKVLVPIVAGTEPVEAAVPIDVLRRAGADVTVASADDGELVVEVMYGVRIVADALVAGG 68
Query: 270 LAEKQQYDAVILPGGLEGSDSLSKSEKVGALLKDH-EDNGKXXXXXXXXXXXXXXHGVAR 446
+D ++LPGG+ G+ +L + A+++ H G G+
Sbjct: 69 DCAAAHFDLIVLPGGVPGAANLGGCAALEAMVRRHAATGGLYAAICAAPPLALASWGMLN 128
Query: 447 GRRVTSYPSTRDK 485
G + T++P DK
Sbjct: 129 GLKATAHPLFVDK 141
Score = 44.4 bits (100), Expect = 6e-05
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Frame = +3
Query: 105 LVILAQGAEEMETVITVDMLRRGGVTVTLAGLEGSSPVLCSRQ-VTLVPDKSLTEALAEK 281
LV +A G EEME + +D+LRR V +A E + + +R + ++ ++ T + K
Sbjct: 219 LVPVANGTEEMELITIIDVLRRADADVVVASAENAGVEIVARHGMRIITERLNTFSPRLK 278
Query: 282 QQYDAVILPGGLEGSDSLSKSEKVGALLK 368
QQ GG G+ ++S +EK+ LLK
Sbjct: 279 QQ-------GGTPGAKTMSSNEKLVTLLK 300
>04_04_1546 -
34301905-34302093,34302549-34302911,34303031-34303471,
34304331-34304447,34304540-34304593
Length = 387
Score = 44.0 bits (99), Expect = 8e-05
Identities = 23/80 (28%), Positives = 41/80 (51%)
Frame = +3
Query: 276 EKQQYDAVILPGGLEGSDSLSKSEKVGALLKDHEDNGKXXXXXXXXXXXXXXHGVARGRR 455
+ YDA+++PGG + L+ ++KV +L+K D K GV +GR+
Sbjct: 270 DASSYDALVIPGG-RAPEYLALNDKVISLVKGFMDKAKPVASICHGQQILSAAGVLQGRK 328
Query: 456 VTSYPSTRDKLSAGDYTYVE 515
T+YP+ + + G T++E
Sbjct: 329 CTAYPAVKLNVVLGGATWLE 348
>02_01_0558 +
4109929-4110042,4110989-4111097,4111404-4111563,
4111721-4111796,4111984-4112109,4112233-4112484
Length = 278
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 156 DMLRRGGVTVTLAGLEGSSPVLCSRQVTLVPD 251
DM+ RG ++ L L G SP L RQ VPD
Sbjct: 201 DMVARGALSCGLGHLGGLSPALNPRQACRVPD 232
>01_04_0136 +
16506747-16506982,16507128-16507728,16510443-16510842,
16513595-16513709,16513776-16514352
Length = 642
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +3
Query: 93 SKSALVILAQGAEEMETVITVDMLRRGG--VTVTLAGLEGSSPVLCSRQVTLVPDKSLT 263
+K A VI++ E ET+ V +L + ++ +L L+G SP LC+ + + + SL+
Sbjct: 528 NKEAPVIISDKLSEDETIRLVTVLEKHHSIMSCSLQDLKGISPALCTHCIPIELESSLS 586
>04_04_1586 - 34621945-34623366
Length = 473
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 98 VCVSDFGAGCRGDGDSYNC*YAETRRGNSYS 190
+C + G GC G GD+ C Y+ T SY+
Sbjct: 189 ICRTLSGTGCGGGGDAGKCDYSVTYGDGSYT 219
>02_05_0230 +
27029725-27030871,27030995-27031113,27031225-27031349,
27031491-27031590,27031680-27031757,27032818-27032901,
27033077-27033162,27033869-27034049,27034596-27034646
Length = 656
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 174 GVTVTLAGLEGSSPVLCSRQVTLVPDKSLTEALAEKQQYDAVI 302
G T+ G GS+ LC+ +V + +AL+ +YD V+
Sbjct: 521 GQTLFCGGFAGSTAALCTTPFDVVKTRVQLQALSPISKYDGVL 563
>05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-225084,
225296-225356,225666-226918
Length = 1891
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 376 SWSLSRAPTFSDLERLSDPSKP 311
SWSLS P F+D + L+ SKP
Sbjct: 1125 SWSLSFTPKFTDEKLLTASSKP 1146
>01_06_1608 - 38612754-38616947,38617030-38617095
Length = 1419
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 376 SWSLSRAPTFSDLERLSDPSKP 311
SWSLS P F+D + L+ SKP
Sbjct: 1129 SWSLSFTPKFTDEKLLTASSKP 1150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,225,891
Number of Sequences: 37544
Number of extensions: 253552
Number of successful extensions: 693
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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