Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_M03
(345 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53148-4|AAB37070.1| 51|Caenorhabditis elegans Ribosomal prote... 94 2e-20
AF303271-1|AAG50229.1| 51|Caenorhabditis elegans ribosomal pro... 94 2e-20
AF039037-4|AAC48229.3| 311|Caenorhabditis elegans Protein kinas... 28 2.1
AC024765-8|AAF60530.1| 165|Caenorhabditis elegans Hypothetical ... 27 3.6
Z95559-7|CAB76730.2| 329|Caenorhabditis elegans Hypothetical pr... 27 4.8
Z22179-9|CAD90178.1| 428|Caenorhabditis elegans Hypothetical pr... 27 4.8
Z22179-8|CAA80170.2| 431|Caenorhabditis elegans Hypothetical pr... 27 4.8
Z22179-7|CAA80167.2| 429|Caenorhabditis elegans Hypothetical pr... 27 4.8
U61952-10|AAQ01532.2| 217|Caenorhabditis elegans Hypothetical p... 27 4.8
Z74472-5|CAA98943.1| 802|Caenorhabditis elegans Hypothetical pr... 26 6.3
>U53148-4|AAB37070.1| 51|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 39 protein.
Length = 51
Score = 94.3 bits (224), Expect = 2e-20
Identities = 42/51 (82%), Positives = 46/51 (90%)
Frame = +2
Query: 32 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 184
MSA K IKRKLAKK KQNRP+PQWVRM+TGNT++YNAKRRHWRRTKLKL
Sbjct: 1 MSALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51
>AF303271-1|AAG50229.1| 51|Caenorhabditis elegans ribosomal
protein L39 protein.
Length = 51
Score = 94.3 bits (224), Expect = 2e-20
Identities = 42/51 (82%), Positives = 46/51 (90%)
Frame = +2
Query: 32 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 184
MSA K IKRKLAKK KQNRP+PQWVRM+TGNT++YNAKRRHWRRTKLKL
Sbjct: 1 MSALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51
>AF039037-4|AAC48229.3| 311|Caenorhabditis elegans Protein kinase
protein 34 protein.
Length = 311
Score = 27.9 bits (59), Expect = 2.1
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = -3
Query: 181 LELCPSPVTPLSVISNSVSCAHPY----PLRNGSVLFQLFGQFALNNKR 47
L++ P P++PLSV++N PY PL GS FGQ AL + R
Sbjct: 4 LQVVPPPISPLSVLANHPD--RPYEVLKPLGQGS-----FGQVALVSNR 45
>AC024765-8|AAF60530.1| 165|Caenorhabditis elegans Hypothetical
protein Y39A3CR.8 protein.
Length = 165
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +2
Query: 59 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 178
K+K+ K +++ +P + TGNT N ++RH R+ ++
Sbjct: 68 KKKVVKSVEKTARMPD--KPETGNTATGNPEKRHKRKKRV 105
>Z95559-7|CAB76730.2| 329|Caenorhabditis elegans Hypothetical
protein Y41E3.14 protein.
Length = 329
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 211 ITFNTFTSLQLELCPSPVTPLSVISNSVSCAHP 113
I F T T + +C S ++ + I SV C++P
Sbjct: 72 IVFLTLTDMSATVCSSIISGVLYIKGSVFCSYP 104
>Z22179-9|CAD90178.1| 428|Caenorhabditis elegans Hypothetical
protein F58A4.7c protein.
Length = 428
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 199 TFTSLQLELC-PSPVTPLSVISNSVSCAHPYPLRNGSVLF 83
T SL+ + P+P+ P+SV +S S + P PL ++F
Sbjct: 303 TLPSLETTVIRPTPLPPISVEISSPSLSTPSPLTAAPIIF 342
>Z22179-8|CAA80170.2| 431|Caenorhabditis elegans Hypothetical
protein F58A4.7b protein.
Length = 431
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 199 TFTSLQLELC-PSPVTPLSVISNSVSCAHPYPLRNGSVLF 83
T SL+ + P+P+ P+SV +S S + P PL ++F
Sbjct: 305 TLPSLETTVIRPTPLPPISVEISSPSLSTPSPLTAAPIIF 344
>Z22179-7|CAA80167.2| 429|Caenorhabditis elegans Hypothetical
protein F58A4.7a protein.
Length = 429
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 199 TFTSLQLELC-PSPVTPLSVISNSVSCAHPYPLRNGSVLF 83
T SL+ + P+P+ P+SV +S S + P PL ++F
Sbjct: 303 TLPSLETTVIRPTPLPPISVEISSPSLSTPSPLTAAPIIF 342
>U61952-10|AAQ01532.2| 217|Caenorhabditis elegans Hypothetical
protein F42A9.9 protein.
Length = 217
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 120 AQETLFDITLRGVTGEGQSSSCKLVNVLNV 209
A +FD+T+ G +GQ +C L+ V+ +
Sbjct: 23 ALSVIFDLTMIGAVKKGQMLNCLLIVVITI 52
>Z74472-5|CAA98943.1| 802|Caenorhabditis elegans Hypothetical
protein F23H12.5 protein.
Length = 802
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -3
Query: 166 SPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLMGRHFEQSSCQN 8
S PLSVIS+S S P+ + +++ ++ + + +G + E SC +
Sbjct: 19 SQYEPLSVISSSWSMWSPWSFCSNNLMIRVRACSTVRGYKCLGHNKEFQSCNS 71
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,309,514
Number of Sequences: 27780
Number of extensions: 92725
Number of successful extensions: 239
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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