Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_M02
         (695 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    23   3.2  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   4.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   4.2  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   7.3  

>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 433 YLFYIFEFSSRHRDYYWENQIVCSN 507
           YL     +++ +R YYW N + C N
Sbjct: 41  YLLTNLTYNNTNRKYYWLN-VCCLN 64


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +3

Query: 39  HNIFIRSYIAKSSFDRHNHNFQLGPPLKSNEI*DNYMKFFKDEI 170
           HN  +R Y+ K+  +  NH  +     + N++ D Y     D +
Sbjct: 327 HNEQLRKYLCKNEDETKNHYSKNTYNEQGNKLADLYKSLGPDSV 370


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +3

Query: 39  HNIFIRSYIAKSSFDRHNHNFQLGPPLKSNEI*DNYMKFFKDEI 170
           HN  +R Y+ K+  +  NH  +     + N++ D Y     D +
Sbjct: 219 HNEQLRKYLCKNEDETKNHYSKNTYNEQGNKLADLYKSLGPDSV 262


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 454 FSSRHRDYYWEN 489
           ++S  R+YYW N
Sbjct: 149 YNSMKREYYWPN 160


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,907
Number of Sequences: 336
Number of extensions: 3590
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)