Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_M02
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    28   1.5  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    27   1.9  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    26   4.5  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    26   4.5  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    26   5.9  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    25   7.8  

>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 10/135 (7%)
 Frame = +2

Query: 212 DVFMRTCARSPGNVAIRQYECGKYHTYAYSELYGVCEYVSQNLQQLKCNKGVIALVSEKN 391
           D F R  A  P  + +  YE    +TY + ELY V   +  +      N G +A  + + 
Sbjct: 434 DAFGRDAASKP--LLLNDYEENLKNTYVFKELYSV-RNIRPSFHSFLGNYGGMAYSAVEA 490

Query: 392 AIIPSVI----------AAAHKCCTSFIFLNSPQDIEIITGKIKLSAVIVINKNRDNVQL 541
            ++   +          A A K  + +  +N P+   +++  I  S       + +N   
Sbjct: 491 YVLKGRVPWTLKHKGGDAKATKSASKYKPINYPKPDNVLSFDIPTSVSRSATMHAENQPC 550

Query: 542 ELFGKKPDTTASMFD 586
            LF  +P    S F+
Sbjct: 551 HLFDHRPKDRKSCFE 565


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 121 NQMKSKIII*NFLKMKFKLSINGDNESRLL*CFYANLREKS 243
           N ++ K ++   LK    L    D +SRLL CF ++L  K+
Sbjct: 250 NHVEEKALVDELLKFLDNLKSVDDRKSRLLQCFESHLNYKA 290


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +2

Query: 539 LELFGKK--PDTTASMFDLNILFYSCDTTAENNFVSQHS 649
           ++ FGK   P T  S+FD+      C     N+F  QH+
Sbjct: 322 IKFFGKSIGPGTGISIFDIQENIGHCSPEIHNHFPKQHT 360


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -1

Query: 203 RDSLSPFI-DSLNFIFKKFHIIILDFI*FKWWS*LKIMIVSIKTTFCYVTSDKNI 42
           +D+LS F+ +S N +    H+ +LD   F+W+       +S+     Y  S  N+
Sbjct: 448 KDTLSEFLGNSANTLTSLLHLTVLDLKIFEWFKEYLSQSLSVSLENVYPGSIPNL 502


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 233 ARSPGNVAIRQYECGKYHTYAYSEL 307
           +R P N+ I  + C K  T+ Y E+
Sbjct: 30  SRYPNNIGIHHFLCEKLATFPYEEI 54


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 209 NNRDSLSPFIDSLNFIFKK-FHIIILDF 129
           N   +LSP  D+L  +FKK   + ILDF
Sbjct: 62  NLAKTLSPIFDNLESVFKKGTDVAILDF 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,737,686
Number of Sequences: 5004
Number of extensions: 57253
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)