Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_M02
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0800 + 21600050-21600106,21601506-21602663,21603029-21603520     29   3.5  
07_03_0589 + 19773904-19774032,19774224-19774298,19774947-197754...    29   3.5  
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948...    29   4.7  
01_07_0360 + 43056226-43057566                                         28   6.2  
01_06_0271 - 28055367-28055402,28055503-28055622,28055710-280558...    28   8.1  
01_01_0277 + 2274383-2274465,2274889-2274955,2275040-2275110,227...    28   8.1  

>07_03_0800 + 21600050-21600106,21601506-21602663,21603029-21603520
          Length = 568

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
 Frame = +2

Query: 347 LKCNKGVIALVSEKNAIIPSVIAAAHKCCTSFIFLNSPQDIEIITGKIKL------SAVI 508
           LKC     A   +K A++ + IAA      S +       I  I+  +KL      S V 
Sbjct: 239 LKCRVAGAATADDKRAMLEAAIAAMSGLDRSSVSCRGLFGILRISSPLKLPTSCHDSLVA 298

Query: 509 VINKNRDNVQLE--LFGKKPDTTASMFDLNILFYSCD 613
           +I    D+  L+  L    P TT+S++D+ ++    D
Sbjct: 299 MIGAKLDHATLDNLLVPAPPGTTSSLYDVTLVLRFLD 335


>07_03_0589 +
           19773904-19774032,19774224-19774298,19774947-19775444,
           19775898-19776263,19776636-19776727,19776826-19776872,
           19776953-19777014,19778461-19778498,19779354-19779366
          Length = 439

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 215 HHNNRDSLSPFIDSLNFIFKKFHIIIL 135
           H    D+LSP  D L++I+K FH++ L
Sbjct: 205 HKYLEDNLSPGQDHLDYIYKLFHLLCL 231


>05_06_0132 +
           25893241-25893435,25894266-25894487,25894567-25894863,
           25894944-25895111,25895201-25895368,25895456-25895536,
           25895704-25895770,25895874-25895971,25896587-25896659,
           25896753-25896823,25896919-25896968,25897698-25897810,
           25898182-25898300,25898629-25898721,25899025-25899051,
           25899422-25899823,25900467-25900513,25900612-25900651,
           25900733-25900795,25900881-25901018,25901873-25902031,
           25902111-25902164,25902324-25902392,25902514-25902643,
           25902909-25902949,25903133-25903178,25903200-25903357,
           25903560-25903605,25903702-25903853,25904022-25904243
          Length = 1202

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 242 PG-NVAIRQYECGKYHTYAYSELYGV 316
           PG N  IR+  CG  H Y  S++YG+
Sbjct: 818 PGLNTVIRELVCGLAHMYNVSKIYGI 843


>01_07_0360 + 43056226-43057566
          Length = 446

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = -3

Query: 444 IKEVQHLCAAAITEGMIAFFSETNAMTPLLHFNCCKFCDT 325
           +KE  H   AA T   I   S+ N  T LLH   C FC T
Sbjct: 329 VKECGHQMCAACTLA-ICCHSKPNPKTLLLHPPACPFCRT 367


>01_06_0271 -
           28055367-28055402,28055503-28055622,28055710-28055892,
           28056006-28056145,28056347-28056595,28056706-28056823,
           28056924-28056999,28057096-28057162,28057282-28057369,
           28057506-28057616,28058127-28058221,28058305-28058344,
           28058736-28058812,28058978-28059026,28059464-28059520,
           28059624-28059713,28059833-28059896,28060076-28060245
          Length = 609

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
 Frame = +2

Query: 209 YDVFMRTCARSPGNVAIRQYE-----CGKYHTYAYSELYGVCEYVSQNLQQLKCNKG 364
           +D+F  T  R P N  + + E      GKY    Y E Y     V  +++ L   KG
Sbjct: 53  WDIFRMTVERCPDNKMLGRREIVDGKAGKYTWITYKEAYDTVIKVGASIRSLGVGKG 109


>01_01_0277 +
           2274383-2274465,2274889-2274955,2275040-2275110,
           2275550-2275667,2275755-2275828,2276094-2276149,
           2276237-2276320,2276422-2276509,2276602-2276679,
           2276814-2276870,2277074-2277578
          Length = 426

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
 Frame = +2

Query: 290 YAYSELYGVCEYVSQNLQQ--LKCNKGVIALVSEKNAIIPSVIAAAHKCCTSFIFLNSPQ 463
           YA  +++ V    S+ L Q  L+     + +V+ +   +P +I    +  TSF+F  +P 
Sbjct: 286 YASGDVF-VMPSESETLGQVVLESMSSGVPVVAARAGGVPDIIPEDQEGKTSFLF--TPG 342

Query: 464 DIEIITGKIKLSAVIVINKNRDNV 535
           D+E   GKI+L  ++   + RDN+
Sbjct: 343 DLEDCLGKIQL--LLTDKEFRDNM 364


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,923,643
Number of Sequences: 37544
Number of extensions: 302070
Number of successful extensions: 675
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)