Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_M02
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_197| Best HMM Match : LISCH7 (HMM E-Value=1.3)                      31   1.2  
SB_29154| Best HMM Match : RNA_pol_Rpb2_7 (HMM E-Value=2.3)            29   3.6  
SB_44471| Best HMM Match : TFIIF_beta (HMM E-Value=1.3)                29   3.6  
SB_27902| Best HMM Match : RNA_pol_Rpb2_7 (HMM E-Value=2.3)            29   3.6  

>SB_197| Best HMM Match : LISCH7 (HMM E-Value=1.3)
          Length = 120

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 460 RRIQKYKRGTTFVCRCYNRRYDCILFRNQCYDT 362
           RR++   R TT  CRC+  R  C   R +C+ T
Sbjct: 15  RRVRDVTRFTTARCRCFAARCRCFATRCRCFAT 47


>SB_29154| Best HMM Match : RNA_pol_Rpb2_7 (HMM E-Value=2.3)
          Length = 416

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 385 KECN-HTFGYSSGTQMLYLFYIFEFSSRHRDYYWENQIVCSNCDQ 516
           KEC    +G S    ++Y + I +  S+  D  W+   VC  C++
Sbjct: 50  KECTKRLWGRSLSFNLMYKYMICDGDSKSYDSIWDQYGVCDTCNK 94


>SB_44471| Best HMM Match : TFIIF_beta (HMM E-Value=1.3)
          Length = 670

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 385 KEC-NHTFGYSSGTQMLYLFYIFEFSSRHRDYYWENQIVCSNCDQ 516
           KEC    +G S    ++Y + I +  S+  D  W+   VC  C++
Sbjct: 304 KECAKRLWGRSLSFNLMYKYMICDGDSKSYDSIWDQYGVCDTCNK 348


>SB_27902| Best HMM Match : RNA_pol_Rpb2_7 (HMM E-Value=2.3)
          Length = 493

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 385 KECN-HTFGYSSGTQMLYLFYIFEFSSRHRDYYWENQIVCSNCDQ 516
           KEC    +G S    ++Y + I +  S+  D  W+   VC  C++
Sbjct: 305 KECTKRLWGRSLSFNLMYKYMICDGDSKSYDSIWDQYGVCDTCNK 349


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,792,375
Number of Sequences: 59808
Number of extensions: 402774
Number of successful extensions: 906
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)