Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_M02
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64598-5|AAK39217.3|  638|Caenorhabditis elegans Mechanosensory ...    30   1.4  
U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AC024817-58|AAF59562.4|  536|Caenorhabditis elegans Hypothetical...    29   2.4  
Z35601-1|CAA84667.2|  320|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AF332213-1|AAK17984.1|  213|Caenorhabditis elegans nuclear recep...    28   5.5  
AC006675-12|AAK84548.1|  418|Caenorhabditis elegans Nuclear horm...    28   5.5  
AB036738-1|BAB13470.1|  320|Caenorhabditis elegans neural RNA-bi...    28   5.5  
Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical p...    28   7.3  
AC024826-3|AAP13746.1|  343|Caenorhabditis elegans Hypothetical ...    28   7.3  
AC024826-2|AAF60798.1|  413|Caenorhabditis elegans Hypothetical ...    28   7.3  

>U64598-5|AAK39217.3|  638|Caenorhabditis elegans Mechanosensory
           abnormality protein18 protein.
          Length = 638

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +2

Query: 191 TMNRGYYDVFMRTCARSPGNVAIRQYECGKYHTYAYSELYGVCEYVSQNLQQLKCNKG 364
           T  + ++D F    +    N+AI   + GK   + YSE+   CE  +  L++L+   G
Sbjct: 14  TAAQSFHDYFFSKISAHGSNLAIVDVDSGKQ--WRYSEIRNWCEMCATRLKELQVTSG 69


>U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical
           protein F10E7.4 protein.
          Length = 819

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = +2

Query: 509 VINKNRDNVQLE-LFGKKPDTTASMFDLNILFYSCDTTAENNFVSQHSFIATTSGST 676
           V+NK    V L  +FG  PD    +  +N+    C    E  F  Q     T SG T
Sbjct: 296 VVNKYHHFVSLATMFGPSPDWCVGLSSVNLCLPDCTWAEERTFELQPFDAGTDSGPT 352


>AC024817-58|AAF59562.4|  536|Caenorhabditis elegans Hypothetical
           protein Y54G2A.29 protein.
          Length = 536

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 12/135 (8%)
 Frame = +2

Query: 302 ELYGVCEYVSQNLQQLKC-----NKGVIALVSEKNAIIPSVIAAAHKCCTSFIF-LNSPQ 463
           E  G+C++V + ++ +KC     N  VI  +        +V    HK  TS  + + + Q
Sbjct: 210 EFAGMCDHVEEGVETVKCVPQTNNTVVIGSLRRDRTYFVTVFVRDHKRGTSSAYEVQTIQ 269

Query: 464 DIEIITGKIKLSAVIVINKNR------DNVQLELFGKKPDTTASMFDLNILFYSCDTTAE 625
             E++T + K++  +   + +       N QLE    +P    +  +L     S    AE
Sbjct: 270 TSEVVTHRRKVTRNVPRKQKKSAPRVLSNGQLEQVELEP-KKGTFVNLKFFVNSLPEGAE 328

Query: 626 NNFVSQHSFIATTSG 670
           NN  S    +    G
Sbjct: 329 NNTQSAMLIVHACDG 343


>Z35601-1|CAA84667.2|  320|Caenorhabditis elegans Hypothetical
           protein R10E9.1 protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
 Frame = +2

Query: 506 IVINKNRDNVQLELFGKKPDTTASMFDL-----NILFYSCDTTAENNFVSQHSFIATTSG 670
           + +NK+R      L+G  P+T  +           L Y   T   NN    +S ++T  G
Sbjct: 218 VQLNKSRAAAARNLYGMPPETLLAYAQYLPRFGGNLMYPNFTNVFNNMPGGYSGLSTPGG 277

Query: 671 STGEPXH 691
           S+  P H
Sbjct: 278 SSNRPPH 284


>AF332213-1|AAK17984.1|  213|Caenorhabditis elegans nuclear receptor
           NHR-99 protein.
          Length = 213

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +2

Query: 344 QLKCNKGVIALVSEKNAIIPSVIAAAHKCCTSFIFLNSPQDIEIITGKIKLSAVIVINKN 523
           Q+K  K +  L S    ++ ++I   +  C+S + L    D +++   IK   V V  ++
Sbjct: 69  QMKFLKSIWKLWSRFERLVTTMIGRRNSACSSNMVLIKLDDTQVVFD-IKKIDVDVSWQS 127

Query: 524 RDNV-QLELFG 553
           R NV QL+LFG
Sbjct: 128 RYNVEQLKLFG 138


>AC006675-12|AAK84548.1|  418|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 99 protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +2

Query: 344 QLKCNKGVIALVSEKNAIIPSVIAAAHKCCTSFIFLNSPQDIEIITGKIKLSAVIVINKN 523
           Q+K  K +  L S    ++ ++I   +  C+S + L    D +++   IK   V V  ++
Sbjct: 229 QMKFLKSIWKLWSRFERLVTTMIGRRNSACSSNMVLIKLDDTQVVFD-IKKIDVDVSWQS 287

Query: 524 RDNV-QLELFG 553
           R NV QL+LFG
Sbjct: 288 RYNVEQLKLFG 298


>AB036738-1|BAB13470.1|  320|Caenorhabditis elegans neural
           RNA-binding protein MSI-1 protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
 Frame = +2

Query: 506 IVINKNRDNVQLELFGKKPDTTASMFDL-----NILFYSCDTTAENNFVSQHSFIATTSG 670
           + +NK+R      L+G  P+T  +           L Y   T   NN    +S ++T  G
Sbjct: 218 VQLNKSRAAAARNLYGMPPETLLAYAQYLPRFGGNLMYPNFTNVFNNMPGGYSGLSTPGG 277

Query: 671 STGEPXH 691
           S+  P H
Sbjct: 278 SSNRPPH 284


>Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical
           protein F28D1.9 protein.
          Length = 684

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 3/124 (2%)
 Frame = +2

Query: 197 NRGYYDVFMRTCARSPGNVAIRQYECGKYHTYAYSELYGVCEYVSQNLQQLKCNKG-VIA 373
           N+G +++F+    ++P   A+   E     TYA  E    C   +   Q L    G V+A
Sbjct: 108 NKGIHELFLDIVKKNPNKPAMIDIETNTTETYA--EFNAHCNRYANYFQGLGYRSGDVVA 165

Query: 374 LVSEKNAIIPSVIAAAHKCCTSFIFLNSPQDIEIITGKIKLS--AVIVINKNRDNVQLEL 547
           L  E +    +      K      ++NS    E +   I  S    I+ +    N+ L+ 
Sbjct: 166 LYMENSVEFVAAWMGLAKIGVVTAWINSNLKREQLVHCITASKTKAIITSVTLQNIMLDA 225

Query: 548 FGKK 559
             +K
Sbjct: 226 IDQK 229


>AC024826-3|AAP13746.1|  343|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.6b protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 363 PLLHFNCCKFCDTYSQTPYNSE 298
           P  H N C  C  +S  PYN+E
Sbjct: 161 PFAHGNYCDMCQQWSLHPYNAE 182


>AC024826-2|AAF60798.1|  413|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.6a protein.
          Length = 413

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 363 PLLHFNCCKFCDTYSQTPYNSE 298
           P  H N C  C  +S  PYN+E
Sbjct: 161 PFAHGNYCDMCQQWSLHPYNAE 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,209,814
Number of Sequences: 27780
Number of extensions: 322740
Number of successful extensions: 808
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)