Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_L24
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...   109   3e-25
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    30   0.28 
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    25   6.0  
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    25   7.9  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   7.9  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score =  109 bits (262), Expect = 3e-25
 Identities = 49/90 (54%), Positives = 72/90 (80%)
 Frame = +2

Query: 149 PXSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANG 328
           P SKELR+++ ++S+P+R+DD++ V+RG  KG++ GK+  VYRKKF++ IER+ REKANG
Sbjct: 33  PLSKELREQYKIRSLPVRRDDQITVIRGSNKGRE-GKITSVYRKKFLLLIERVTREKANG 91

Query: 329 ATAYVGIHPSKCVIVKLKMNKDRKAILDRR 418
           A+A VGI  SK VI KL ++KDRK ++ R+
Sbjct: 92  ASAPVGIDASKVVITKLHLDKDRKDLIVRK 121



 Score = 58.0 bits (134), Expect = 9e-10
 Identities = 30/53 (56%), Positives = 37/53 (69%)
 Frame = +1

Query: 52  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLX*GTKTKIQCKIHAYSQRR 210
           MKF++ VTSSRRK RK HF APS +RRVLMS+PL    + + Q KI +   RR
Sbjct: 1   MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPL--SKELREQYKIRSLPVRR 51


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 29.9 bits (64), Expect = 0.28
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -3

Query: 340 ICCCTIGLFSLNPLNVYNKLFTIHLHHFA---NLLTFVVSTYNLNFIVFANRH 191
           + C +I LFS  PL+  N+ F I+L  F+    L   ++ST  + F  F  RH
Sbjct: 825 LTCISIPLFSFEPLSKKNR-FLINLFRFSFSFILYNLLISTSTVFFAGFFRRH 876


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 341 VGIHPSKCV-IVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 463
           +GI P K    +K  + KDR A ++RR +G    +G D+  Y
Sbjct: 256 IGIDPEKFSDALKSDVVKDRIASIERRLQGVKVIVGVDRLDY 297


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 222 LYVDTTKVNRLAK*CRCIVKSLLYTLRGF 308
           LY D  +    A+ C C+V++LLY  R F
Sbjct: 78  LYHDNHERKMSAQSCACMVRTLLYGKRFF 106


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 463 VFTLVFAKCSQSALCSAIEDCFAVFIH 383
           +F LV    S   +C  IED F   IH
Sbjct: 588 LFNLVATNASDPYICGIIEDTFEDIIH 614


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,074,643
Number of Sequences: 5004
Number of extensions: 42509
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)