Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_L17
(813 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa... 359 e-100
SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc... 351 7e-98
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas... 295 6e-81
SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ... 288 6e-79
SPBC26H8.05c |||serine/threonine protein phosphatase |Schizosacc... 283 2e-77
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas... 222 4e-59
SPCC31H12.05c |sds21||serine/threonine protein phosphatase Sds21... 210 1e-55
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 197 2e-51
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 196 4e-51
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 130 2e-31
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 30 0.34
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 27 3.2
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 27 4.2
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 27 4.2
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 26 5.5
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 26 7.3
SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc... 26 7.3
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 26 7.3
>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 359 bits (882), Expect = e-100
Identities = 155/205 (75%), Positives = 181/205 (88%)
Frame = +1
Query: 199 MEDKASLKELDQWIQQLNECKQLTENQVKTLCDKAKEILTKESNVQEVKCPVTVCGDVHG 378
M + E+D+WI+QL+ C+ L+E V +CD AKE+L+ ESNVQ V+CPVTVCGD+HG
Sbjct: 1 MSVSGKIGEVDRWIEQLSRCEPLSEEDVIQMCDLAKEVLSVESNVQSVRCPVTVCGDIHG 60
Query: 379 QFHDLMELFRIGGRSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES 558
QFHDLMELF IGG SPDTNYLFMGDYVDRGY+SVETV+LL+A K+RY +RITILRGNHES
Sbjct: 61 QFHDLMELFNIGGPSPDTNYLFMGDYVDRGYHSVETVSLLIAFKIRYPQRITILRGNHES 120
Query: 559 RQITQVYGFYDECLRKYGNASVWKHFTDLFDFLPLTALVXGQIFCLHGGLSPSIDTLDHI 738
RQITQVYGFYDECLRKYGNA+VW++FTDLFD+LPLTAL+ +IFCLHGGLSPSIDTLDH+
Sbjct: 121 RQITQVYGFYDECLRKYGNANVWQYFTDLFDYLPLTALIEDRIFCLHGGLSPSIDTLDHV 180
Query: 739 XALDRLQEVPHXGPMCDLLWSDPDD 813
LDR+QEVPH GP+CDLLWSDPDD
Sbjct: 181 RILDRVQEVPHEGPICDLLWSDPDD 205
>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 351 bits (863), Expect = 7e-98
Identities = 152/201 (75%), Positives = 181/201 (90%)
Frame = +1
Query: 211 ASLKELDQWIQQLNECKQLTENQVKTLCDKAKEILTKESNVQEVKCPVTVCGDVHGQFHD 390
A+L ++D+WI+QL +C+ L+E V+ LCDKA+E+L +E+NVQ V+ PVTVCGD+HGQFHD
Sbjct: 18 ATLGDVDRWIEQLKKCEPLSEADVEMLCDKAREVLCQENNVQPVRNPVTVCGDIHGQFHD 77
Query: 391 LMELFRIGGRSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQIT 570
LMELF+IGG PD NYLFMGDYVDRGY+SVETV+LLVA+K+RY RITILRGNHESRQIT
Sbjct: 78 LMELFKIGGDVPDMNYLFMGDYVDRGYHSVETVSLLVAMKLRYPNRITILRGNHESRQIT 137
Query: 571 QVYGFYDECLRKYGNASVWKHFTDLFDFLPLTALVXGQIFCLHGGLSPSIDTLDHIXALD 750
QVYGFYDECLRKYG+A+VWKHFT+LFD+ PLTAL+ +IFCLHGGLSPSID+LDH+ LD
Sbjct: 138 QVYGFYDECLRKYGSANVWKHFTNLFDYFPLTALIEDRIFCLHGGLSPSIDSLDHVRTLD 197
Query: 751 RLQEVPHXGPMCDLLWSDPDD 813
R+QEVPH GPMCDLLWSDPDD
Sbjct: 198 RVQEVPHEGPMCDLLWSDPDD 218
>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 295 bits (723), Expect = 6e-81
Identities = 124/197 (62%), Positives = 157/197 (79%)
Frame = +1
Query: 223 ELDQWIQQLNECKQLTENQVKTLCDKAKEILTKESNVQEVKCPVTVCGDVHGQFHDLMEL 402
+LD+WI + +CK L E+Q+K LC+ K IL +ESN+Q V+ PVTVCGD+HGQF+DL+EL
Sbjct: 3 DLDEWIATVRKCKYLPEHQLKRLCEMVKVILMEESNIQPVRTPVTVCGDIHGQFYDLLEL 62
Query: 403 FRIGGRSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYG 582
FR+GG P TNY+FMGD+VDRGY+S+ET TL + LK RY ++IT+LRGNHESRQITQVYG
Sbjct: 63 FRVGGELPSTNYIFMGDFVDRGYFSLETFTLFMLLKARYPDKITLLRGNHESRQITQVYG 122
Query: 583 FYDECLRKYGNASVWKHFTDLFDFLPLTALVXGQIFCLHGGLSPSIDTLDHIXALDRLQE 762
FYDEC KYGNA+VWK+ +FDFL L A++ +I C+HGGLSP + TLD I L R QE
Sbjct: 123 FYDECQTKYGNANVWKYCCQVFDFLTLAAVIDNKILCVHGGLSPEVRTLDQIRILARAQE 182
Query: 763 VPHXGPMCDLLWSDPDD 813
+PH G CDL+WSDP+D
Sbjct: 183 IPHEGSFCDLMWSDPED 199
>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 307
Score = 288 bits (707), Expect = 6e-79
Identities = 126/196 (64%), Positives = 156/196 (79%)
Frame = +1
Query: 223 ELDQWIQQLNECKQLTENQVKTLCDKAKEILTKESNVQEVKCPVTVCGDVHGQFHDLMEL 402
+LD I++L E + + E+ + LC AKE+L +ESNV + P+TV GD+HGQF DL+E+
Sbjct: 3 DLDNIIERLYEKQLIAESVIAYLCSLAKEVLMQESNVVRLSTPITVVGDIHGQFDDLLEI 62
Query: 403 FRIGGRSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYG 582
FRIGG P TNYLF+GDYVDRGYYS+ET+TLL+ LK+RY +RIT+LRGNHESR ITQ YG
Sbjct: 63 FRIGGPCPYTNYLFLGDYVDRGYYSIETITLLICLKLRYPKRITLLRGNHESRGITQTYG 122
Query: 583 FYDECLRKYGNASVWKHFTDLFDFLPLTALVXGQIFCLHGGLSPSIDTLDHIXALDRLQE 762
FY ECLRKYGNA+VWK+FTD+FDFL L+A + IFC+HGGLSPSI +D I LDR +E
Sbjct: 123 FYSECLRKYGNANVWKYFTDIFDFLTLSATIDDTIFCVHGGLSPSIQHIDQILVLDRFRE 182
Query: 763 VPHXGPMCDLLWSDPD 810
PH GPM DL+WSDPD
Sbjct: 183 FPHEGPMADLVWSDPD 198
>SPBC26H8.05c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 283 bits (694), Expect = 2e-77
Identities = 119/197 (60%), Positives = 158/197 (80%)
Frame = +1
Query: 223 ELDQWIQQLNECKQLTENQVKTLCDKAKEILTKESNVQEVKCPVTVCGDVHGQFHDLMEL 402
+LD +++L + + E+ V LC + ++IL +ESN+Q + PVT+CGD+HGQ HDL+EL
Sbjct: 5 DLDWQLEELENGRLIPESNVVELCQRVRDILIEESNIQWISSPVTICGDIHGQLHDLLEL 64
Query: 403 FRIGGRSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYG 582
FRIGG P T YLF+GD+VDRG+YSVET LL+ LK +Y + +T++RGNHESRQITQVYG
Sbjct: 65 FRIGGSCPGTKYLFLGDFVDRGFYSVETFLLLLTLKCKYPKEMTLIRGNHESRQITQVYG 124
Query: 583 FYDECLRKYGNASVWKHFTDLFDFLPLTALVXGQIFCLHGGLSPSIDTLDHIXALDRLQE 762
FYDEC+RKYG+A+VW++ ++FD+L L ALV G++FC+HGGLSPSI ++D I LDR QE
Sbjct: 125 FYDECVRKYGSANVWRYCCEIFDYLSLGALVDGKVFCVHGGLSPSISSIDQIRLLDRKQE 184
Query: 763 VPHXGPMCDLLWSDPDD 813
VPH G MCDLLWSDP+D
Sbjct: 185 VPHEGAMCDLLWSDPED 201
>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
PP1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 222 bits (543), Expect = 4e-59
Identities = 93/183 (50%), Positives = 134/183 (73%)
Frame = +1
Query: 262 QLTENQVKTLCDKAKEILTKESNVQEVKCPVTVCGDVHGQFHDLMELFRIGGRSPDTNYL 441
QL+E++++ LC+KA+EI + + E++ P+ +CGD+HGQ++DL+ LF GG P+ NYL
Sbjct: 28 QLSEDEIRFLCNKAREIFISQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPEANYL 87
Query: 442 FMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNAS 621
F+GDYVDRG S+E + LL+A K++Y E ILRGNHE I ++YGFYDEC R+Y N
Sbjct: 88 FLGDYVDRGKQSLEVICLLLAYKIKYPENFFILRGNHECASINRIYGFYDECKRRY-NIK 146
Query: 622 VWKHFTDLFDFLPLTALVXGQIFCLHGGLSPSIDTLDHIXALDRLQEVPHXGPMCDLLWS 801
+WK FTD F+ LP+ A++ +IF +HGGLSP ++++D I + R +VP G +CDLLWS
Sbjct: 147 LWKTFTDCFNCLPIAAIIDEKIFTMHGGLSPDLNSMDQIQRIMRPTDVPDTGLLCDLLWS 206
Query: 802 DPD 810
DPD
Sbjct: 207 DPD 209
>SPCC31H12.05c |sds21||serine/threonine protein phosphatase
Sds21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 210 bits (514), Expect = 1e-55
Identities = 86/183 (46%), Positives = 129/183 (70%)
Frame = +1
Query: 262 QLTENQVKTLCDKAKEILTKESNVQEVKCPVTVCGDVHGQFHDLMELFRIGGRSPDTNYL 441
QL++ +++ LC ++ I + + E++ P+ +CGD+HGQ+ DL+ LF GG PD NYL
Sbjct: 25 QLSDAEIRYLCTTSRSIFLSQPMLLELEAPLKICGDIHGQYSDLLRLFEYGGYPPDANYL 84
Query: 442 FMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNAS 621
F+GDYVDRG S+E + LL A K++Y E +LRGNHE I ++YGFYDEC R+Y +
Sbjct: 85 FLGDYVDRGKQSLEVICLLFAYKIKYPENFFLLRGNHEFASINRIYGFYDECKRRY-SIK 143
Query: 622 VWKHFTDLFDFLPLTALVXGQIFCLHGGLSPSIDTLDHIXALDRLQEVPHXGPMCDLLWS 801
+WK FTD F+ +P+ A++ +IFC+HGGLSP +++LD I + R ++P G +CDL+WS
Sbjct: 144 LWKTFTDCFNCMPVAAVIDEKIFCMHGGLSPDLNSLDQIQRIIRPTDIPDTGLLCDLVWS 203
Query: 802 DPD 810
DP+
Sbjct: 204 DPE 206
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 197 bits (480), Expect = 2e-51
Identities = 89/183 (48%), Positives = 122/183 (66%)
Frame = +1
Query: 265 LTENQVKTLCDKAKEILTKESNVQEVKCPVTVCGDVHGQFHDLMELFRIGGRSPDTNYLF 444
L ++ ++C +EI + + E+ PV + GDVHGQ+ DL+ LF + G P +NYLF
Sbjct: 214 LKNAEITSICMAVREIFLSQPTLLELTPPVKIVGDVHGQYSDLIRLFEMCGFPPSSNYLF 273
Query: 445 MGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNASV 624
+GDYVDRG S+ET+ LL K+RY E +LRGNHE IT+VYGFYDEC R+ N +
Sbjct: 274 LGDYVDRGKQSLETILLLFLYKIRYPENFFLLRGNHECANITRVYGFYDECKRRC-NIKI 332
Query: 625 WKHFTDLFDFLPLTALVXGQIFCLHGGLSPSIDTLDHIXALDRLQEVPHXGPMCDLLWSD 804
WK F + F+ LP+ ++V G+IFC+HGGLSPS+ +D I + R +VP G + DLLWSD
Sbjct: 333 WKTFINTFNCLPIASVVAGKIFCVHGGLSPSLSHMDDIREIPRPTDVPDYGLLNDLLWSD 392
Query: 805 PDD 813
P D
Sbjct: 393 PAD 395
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 196 bits (477), Expect = 4e-51
Identities = 91/182 (50%), Positives = 121/182 (66%)
Frame = +1
Query: 262 QLTENQVKTLCDKAKEILTKESNVQEVKCPVTVCGDVHGQFHDLMELFRIGGRSPDTNYL 441
+L+E Q + KA EIL E N+ EV PVTVCGD+HGQ++DLM+LF +GG +T YL
Sbjct: 84 RLSEEQTLYIIKKATEILKSEDNLIEVDAPVTVCGDIHGQYYDLMKLFEVGGNPANTQYL 143
Query: 442 FMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNAS 621
F+GDYVDRGY+S+E + L ALK+ Y + + +LRGNHE +T + F EC KY N
Sbjct: 144 FLGDYVDRGYFSIECLLYLWALKIWYPKTLWLLRGNHECAHLTDYFTFKLECTHKY-NIK 202
Query: 622 VWKHFTDLFDFLPLTALVXGQIFCLHGGLSPSIDTLDHIXALDRLQEVPHXGPMCDLLWS 801
V++ F+ LPL A++ Q C+HGGLSP + TL+ I ++R E P G MCDLLWS
Sbjct: 203 VYEACLQSFNALPLAAIMNKQFLCVHGGLSPELHTLNDIRMINRFCEPPTHGLMCDLLWS 262
Query: 802 DP 807
DP
Sbjct: 263 DP 264
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 130 bits (314), Expect = 2e-31
Identities = 72/213 (33%), Positives = 118/213 (55%), Gaps = 8/213 (3%)
Frame = +1
Query: 193 IIMEDKASLKELDQWIQQLNECKQLTENQVKTLCDKAKEILTKESNVQEVKCP----VTV 360
+I+E + + + ++ ++ + K+L ++ KE+L K ++ ++ + +
Sbjct: 155 VILEKQITKEFVEDMKERFCQGKKLPLKFAYSILRDLKELLEKTPSLIDIPVKGDETLVI 214
Query: 361 CGDVHGQFHDLMELFRIGGR-SPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITI 537
CGD HGQ+ DL+ +F++ G SP YLF GD+VDRG +S E L A K+ Y + + I
Sbjct: 215 CGDTHGQYFDLLNIFKLHGPPSPTNKYLFNGDFVDRGSWSTEVAFTLYAYKLLYPDAVFI 274
Query: 538 LRGNHESRQITQVYGFYDECLRKYGNASVWKHFTDLFDFLPLTALVXGQIFCLHGGL-SP 714
RGNHE+ + +VYGF EC KY N + F++ F LPL +L+ +HGGL S
Sbjct: 275 NRGNHETDDMNKVYGFEGECRSKY-NERTFNIFSETFSLLPLGSLISDSYLVVHGGLFSD 333
Query: 715 SIDTLDHIXALDRL--QEVPHXGPMCDLLWSDP 807
TLD + +DR ++ G M ++LW+DP
Sbjct: 334 DNVTLDQLRNIDRFSKKQPGQSGLMMEMLWTDP 366
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 30.3 bits (65), Expect = 0.34
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +1
Query: 196 IMEDKASL-KELDQWIQQLNECKQLTENQVKTLCDKAKEI--LTKESNVQEVKCPVTVCG 366
+ ED SL KEL I + N +Q E K KE+ L K++ +K VC
Sbjct: 1296 VAEDTKSLGKELQNKINEKNLAEQKVEELQSQSFTKNKEVDLLRKKAQKAILKQADVVCA 1355
Query: 367 DVHGQFHDLM 396
+ G HDL+
Sbjct: 1356 TLSGSGHDLV 1365
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 211 ASLKELDQWIQQLNECKQLTENQVKTLCDKAKEILTKESNVQ 336
ASL+ +D W Q +NE + +Q + +IL K N++
Sbjct: 775 ASLENVDSWYQDINEIVNIIVSQRLISPTQLLDILGKSVNIK 816
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +1
Query: 568 TQVYGFYDECLRKYGNASVWKHFTDLFDFLPLTALVXGQI 687
T Y + CL++Y + WK T + D P++ +I
Sbjct: 31 TSKYAVHASCLQEYLDKEAWKDDTLIIDLRPVSEFSKSRI 70
>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = -2
Query: 776 PXWGTSCRRSRAXMWS-RVSIDGLSPP 699
P WG R R MWS R G+ PP
Sbjct: 420 PYWGEKERSIRENMWSIRAKFFGIEPP 446
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 26.2 bits (55), Expect = 5.5
Identities = 9/39 (23%), Positives = 25/39 (64%)
Frame = +1
Query: 220 KELDQWIQQLNECKQLTENQVKTLCDKAKEILTKESNVQ 336
K +D+W + +E ++ T+ +++ L + +EIL + +++
Sbjct: 209 KSMDEWRKSTDEWRKSTDERLENLLNIVREILDVQRDMR 247
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 25.8 bits (54), Expect = 7.3
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 172 CTLITHTIIMEDKASLKELDQWIQQLNECKQLTENQVKTLCDKAKEILTK 321
C I T E +A+++ L +WI N+ K L + ++++ KE+ TK
Sbjct: 114 CRKIVMTYASEWRATVERLGRWIDFDNDYKTLYPSFMESVWWVFKELHTK 163
>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 126
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/28 (42%), Positives = 21/28 (75%), Gaps = 2/28 (7%)
Frame = +1
Query: 502 ALKVRYRERITILRGNHESRQ--ITQVY 579
+L VR ++IT++RG+++ R+ IT VY
Sbjct: 46 SLPVRRDDQITVIRGSNKGREGKITSVY 73
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 669 RRQGQEIE*IGEVLPDGRVAVFPEALVVEAV 577
R G + ++ PDG VA FP L +E++
Sbjct: 517 RNYGNILVEFSKITPDGLVAFFPSYLYLESI 547
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,008,112
Number of Sequences: 5004
Number of extensions: 55699
Number of successful extensions: 170
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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