Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_L15
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    28   1.2  
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo...    26   3.6  
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    26   4.8  
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    25   6.3  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    25   8.4  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    25   8.4  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   8.4  
SPAC6F6.10c |arc2|arc34|ARP2/3 actin-organizing complex subunit ...    25   8.4  

>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 383 HNVKKVNDAFVSSGDFQQLPVNSSKNEPMIT--LPSPKLDNVWAAINV 520
           H +KK+ND     G   QLP+    NE  +T  +  PK  + + A N+
Sbjct: 112 HELKKLNDDHTVHGVLVQLPLPKHLNERTVTESITPPKDVDGFGAFNI 159


>SPAC12B10.07 |acp1||F-actin capping protein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +2

Query: 221 IRETQRENRDLKMPNVNMG--KKPDKYFSFTNVELPVKYNSK-FMNSIW 358
           +++ ++   D  + +V  G  KK D+  SFT V +  KYN K + N  W
Sbjct: 107 VKQIKKVASDHYLSDVTFGIIKKSDEVESFTIVLVSSKYNPKNYWNGSW 155


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +2

Query: 89  SNSFELIIPQKKTVTLSKLIFELCKACELKKMSCIPPSAF--TAGRIRETQRENRDLKMP 262
           S   +++IP K +V  + L   L   C    ++C+ P  F  T   +R ++   R   + 
Sbjct: 301 SKKNDVLIPYKDSVLTTLLQDALGGNCRTIMLTCVSPCDFDDTFSALRYSEAARRIKNIS 360

Query: 263 NVN 271
           N+N
Sbjct: 361 NIN 363


>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/56 (26%), Positives = 31/56 (55%)
 Frame = +2

Query: 113 PQKKTVTLSKLIFELCKACELKKMSCIPPSAFTAGRIRETQRENRDLKMPNVNMGK 280
           PQ++T    +  F+  KA    KM+ +PP+AF+   ++ +   N+D+   ++ + K
Sbjct: 64  PQQQTHMPHQNAFDSAKATA--KMA-LPPTAFSNYCVKPSLTRNKDIPRTSIRVSK 116


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 371 RYSPHNVKKVNDAFVSSGDFQQLPVNSSKNEPMITLPS 484
           R S  N KK +D   S+GD     V+S  +  ++ LPS
Sbjct: 417 RSSSENNKKEDDLKDSTGDLNTTQVSSRVDNFLLKLPS 454


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +2

Query: 365 YNRYSPHNVKKVNDAFVSSGDFQQLPVNSSKN----EPMITLPSPKLDNVW 505
           +N  S  +VKK  +  + S    QL  NS  +       +T+P  K+D VW
Sbjct: 530 HNSPSLLSVKKRQNNHIRSNTLIQLNSNSKDSTIFPRRSVTVPGDKIDTVW 580


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -1

Query: 162  LHSSKINLLSVTVFFCGMMSSKLLESSQTLRYVQRNFLGFSSTMNYTDQ 16
            LH+SK++ LS T      ++  L E+++ L   +R F  F S  +  DQ
Sbjct: 1415 LHNSKVSKLSFTKSNKSTLNPNLKETAEEL---ERKFREFCSNKDELDQ 1460


>SPAC6F6.10c |arc2|arc34|ARP2/3 actin-organizing complex subunit
           Arc34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 586 LFKNVILFHIKKEKTKLSMRLR 521
           +F+N + FHIK  K  +  R+R
Sbjct: 264 VFRNTLHFHIKASKAYMHQRMR 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,533,724
Number of Sequences: 5004
Number of extensions: 54161
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)