Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_L15
(597 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067608-6|AAC17648.2| 194|Caenorhabditis elegans Hypothetical ... 29 1.9
Z81069-5|CAB02995.1| 504|Caenorhabditis elegans Hypothetical pr... 29 2.5
AF067608-7|AAM15538.1| 205|Caenorhabditis elegans Hypothetical ... 28 4.4
AF025457-4|AAB70966.1| 385|Caenorhabditis elegans Hypothetical ... 28 5.8
Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z75553-3|CAA99948.1| 407|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z69793-6|CAI46593.1| 424|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z69793-5|CAA93673.2| 441|Caenorhabditis elegans Hypothetical pr... 27 7.7
X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomera... 27 7.7
AF047661-2|AAK71389.1| 886|Caenorhabditis elegans Hypothetical ... 27 7.7
AF016428-5|ABR92601.1| 152|Caenorhabditis elegans Hypothetical ... 27 7.7
>AF067608-6|AAC17648.2| 194|Caenorhabditis elegans Hypothetical
protein B0511.9a protein.
Length = 194
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Frame = +2
Query: 65 TYRSVCEDSNSFELIIPQKKTVTLSKLIFELCKACELKKMSCI----PPSAFTAGRIRET 232
T +CED + + Q L +I C+ ++ +M + PP T +R
Sbjct: 9 TQLELCEDD--IQWLTDQLNKRVLPAVIVPKCEMMDIDEMEPMDQSEPPRGITRRNLRSA 66
Query: 233 QRENRDLKMPNVNMGKKPDKYFSFTNVELPV 325
R+NRD+ P+ + + T+ PV
Sbjct: 67 DRKNRDVPGPSTGECTRTSIAPTLTSARTPV 97
>Z81069-5|CAB02995.1| 504|Caenorhabditis elegans Hypothetical
protein F25H9.5 protein.
Length = 504
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 83 EDSNSFELIIPQKKTVTLSKLIFELCKAC 169
E+ N EL I KT KL+F L K C
Sbjct: 86 EEENGIELNIESGKTADTKKLLFHLAKEC 114
>AF067608-7|AAM15538.1| 205|Caenorhabditis elegans Hypothetical
protein B0511.9b protein.
Length = 205
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = +2
Query: 65 TYRSVCEDSNSFELIIPQKKTVTLSKLIFELCKACELKKMSCI----PPSAFTAGRIRET 232
T +CED + + Q L +I C+ ++ +M + PP T +R
Sbjct: 9 TQLELCEDD--IQWLTDQLNKRVLPAVIVPKCEMMDIDEMEPMDQSEPPRGITRRNLRSA 66
Query: 233 QRENRDLKMPN 265
R+NRD+ P+
Sbjct: 67 DRKNRDVPGPS 77
>AF025457-4|AAB70966.1| 385|Caenorhabditis elegans Hypothetical
protein C08E3.6 protein.
Length = 385
Score = 27.9 bits (59), Expect = 5.8
Identities = 21/66 (31%), Positives = 28/66 (42%)
Frame = +2
Query: 242 NRDLKMPNVNMGKKPDKYFSFTNVELPVKYNSKFMNSIWGKYNRYSPHNVKKVNDAFVSS 421
N+DLK+ V GK + F N + K KF+ I N + K V FVS
Sbjct: 177 NKDLKLM-VESGKAQMELFRLDNKGIQKKSRKKFIAGIEKALNSAKNLSSKTVQTQFVSY 235
Query: 422 GDFQQL 439
+ QL
Sbjct: 236 PELAQL 241
>Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical
protein M01E5.5b protein.
Length = 734
Score = 27.5 bits (58), Expect = 7.7
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Frame = +2
Query: 206 FTAGRIRETQRENRDLKMPNVNMGKKPDKYFSFTNVELPVKYNSK-FMNSIWGKYNRYSP 382
F + ++ E ++ ++ + +GK +YF+ +VE V N K FM + +
Sbjct: 485 FDSAKLNEDDKKEKEFVVEFDFLGKDSIRYFNRVSVEKRVYKNLKIFMEGKAPSDDLFDR 544
Query: 383 HNVKKVNDAFVSSGD------FQQLPVNSSKNEPMITLPSPKLDNVWAAI 514
+ +ND S D F+ + + E +I L +PK DNV A I
Sbjct: 545 LDTATLNDHLRSLMDGLTVKVFRTYNASITLQEQLIKLTNPK-DNVAAKI 593
>Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical
protein M01E5.5a protein.
Length = 806
Score = 27.5 bits (58), Expect = 7.7
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Frame = +2
Query: 206 FTAGRIRETQRENRDLKMPNVNMGKKPDKYFSFTNVELPVKYNSK-FMNSIWGKYNRYSP 382
F + ++ E ++ ++ + +GK +YF+ +VE V N K FM + +
Sbjct: 557 FDSAKLNEDDKKEKEFVVEFDFLGKDSIRYFNRVSVEKRVYKNLKIFMEGKAPSDDLFDR 616
Query: 383 HNVKKVNDAFVSSGD------FQQLPVNSSKNEPMITLPSPKLDNVWAAI 514
+ +ND S D F+ + + E +I L +PK DNV A I
Sbjct: 617 LDTATLNDHLRSLMDGLTVKVFRTYNASITLQEQLIKLTNPK-DNVAAKI 665
>Z75553-3|CAA99948.1| 407|Caenorhabditis elegans Hypothetical
protein ZC443.3 protein.
Length = 407
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 266 VNMGKKPDKYFSFTNVELPVKYNSKFMNSIWGKYNRYS 379
V ++ D+++++ V P K+N M SI NR+S
Sbjct: 37 VGSPERVDEFYNYIKVYTPSKHNDLCMMSITADINRFS 74
>Z69793-6|CAI46593.1| 424|Caenorhabditis elegans Hypothetical
protein R03A10.4b protein.
Length = 424
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 167 CELKKMSCIPPSAFTAGRIRETQREN 244
C KK++ IPPSAF + R + + N
Sbjct: 373 CREKKLAVIPPSAFYSARDNKLKNSN 398
>Z69793-5|CAA93673.2| 441|Caenorhabditis elegans Hypothetical
protein R03A10.4a protein.
Length = 441
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 167 CELKKMSCIPPSAFTAGRIRETQREN 244
C KK++ IPPSAF + R + + N
Sbjct: 390 CREKKLAVIPPSAFYSARDNKLKNSN 415
>X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomerase
protein.
Length = 806
Score = 27.5 bits (58), Expect = 7.7
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Frame = +2
Query: 206 FTAGRIRETQRENRDLKMPNVNMGKKPDKYFSFTNVELPVKYNSK-FMNSIWGKYNRYSP 382
F + ++ E ++ ++ + +GK +YF+ +VE V N K FM + +
Sbjct: 557 FDSAKLNEDDKKEKEFVVEFDFLGKDSIRYFNRVSVEKRVYKNLKIFMEGKAPSDDLFDR 616
Query: 383 HNVKKVNDAFVSSGD------FQQLPVNSSKNEPMITLPSPKLDNVWAAI 514
+ +ND S D F+ + + E +I L +PK DNV A I
Sbjct: 617 LDTATLNDHLRSLMDGLTVKVFRTYNASITLQEQLIKLTNPK-DNVAAKI 665
>AF047661-2|AAK71389.1| 886|Caenorhabditis elegans Hypothetical
protein M70.3b protein.
Length = 886
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 271 INIGHLQVTIFTLSFTNTPSRKSGWRNARHFLQFT 167
I IG L +++F +S ++PS++S HF F+
Sbjct: 7 IIIGILLISVFCISSGSSPSKQSETAKTSHFTDFS 41
>AF016428-5|ABR92601.1| 152|Caenorhabditis elegans Hypothetical
protein T05C3.6b protein.
Length = 152
Score = 27.5 bits (58), Expect = 7.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 329 YNSKFMNSIWGKYNRYSPHNV 391
Y + N+ W Y RYSPH +
Sbjct: 129 YTTDDTNTSWNVYRRYSPHEI 149
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,021,988
Number of Sequences: 27780
Number of extensions: 304174
Number of successful extensions: 831
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -