Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_L12
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 216 1e-56
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390... 205 2e-53
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337... 203 7e-53
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978 88 4e-18
03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372 38 0.007
03_01_0404 + 3138624-3140096 31 0.62
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 29 2.5
01_07_0179 - 41814886-41815074,41815172-41815222,41815365-418154... 29 2.5
06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045... 28 4.4
03_05_0830 + 28034179-28035492 28 5.8
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 28 5.8
07_03_1085 - 23851852-23853165 27 7.7
03_01_0646 + 4742398-4742994,4743681-4744085 27 7.7
>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
Length = 148
Score = 216 bits (527), Expect = 1e-56
Identities = 90/129 (69%), Positives = 118/129 (91%)
Frame = +3
Query: 93 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 272
+ FQHILR++NTN+DGK+K+MFA+T+IKG+GRR+SNI KKADID++KRAGE T EE+E+
Sbjct: 3 EDFQHILRLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEELER 62
Query: 273 IITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHY 452
++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHY
Sbjct: 63 LMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHY 122
Query: 453 WGLRVRGQH 479
WGLRVRGQH
Sbjct: 123 WGLRVRGQH 131
>07_01_0525 +
3904388-3904390,3904485-3904645,3905347-3905394,
3905714-3905902,3906872-3906977
Length = 168
Score = 205 bits (500), Expect = 2e-53
Identities = 94/151 (62%), Positives = 122/151 (80%), Gaps = 16/151 (10%)
Frame = +3
Query: 75 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 239
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRSGVVC 60
Query: 240 -----------AGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLD 386
AGE T EE+E+++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ LD
Sbjct: 61 YYLAVHNYVEWAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALD 120
Query: 387 SKLREDLERLKKIRAHRGMRHYWGLRVRGQH 479
KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 121 MKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 151
>03_06_0283 -
32832572-32832677,32833343-32833531,32833582-32833796,
32833900-32833902
Length = 170
Score = 203 bits (496), Expect = 7e-53
Identities = 94/153 (61%), Positives = 122/153 (79%), Gaps = 18/153 (11%)
Frame = +3
Query: 75 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 239
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRQEPPP 60
Query: 240 -------------AGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSN 380
AGE T EE+E+++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+
Sbjct: 61 PPSRRQISVMVGGAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNA 120
Query: 381 LDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 479
LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 121 LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 153
>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
Length = 78
Score = 88.2 bits (209), Expect = 4e-18
Identities = 39/55 (70%), Positives = 46/55 (83%), Gaps = 1/55 (1%)
Frame = +3
Query: 318 WFL-NRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 479
W L R+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 7 WILPERKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 61
>03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372
Length = 161
Score = 37.5 bits (83), Expect = 0.007
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = +3
Query: 396 REDLERLKKIRAHRGMRHYWGLRVRGQ 476
R +ERLK+IR +RG+RH GL VRGQ
Sbjct: 108 RVAIERLKEIRCYRGIRHKLGLPVRGQ 134
>03_01_0404 + 3138624-3140096
Length = 490
Score = 31.1 bits (67), Expect = 0.62
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 348 DGKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 446
+G Y QL++ LDS ++D R++K+ RG+R
Sbjct: 403 EGVYVQLSNIYLDSNRKDDARRVRKLIGSRGIR 435
>10_07_0063 -
12502305-12503361,12503567-12503668,12504251-12504378,
12504653-12504764,12504876-12504927,12505260-12505517,
12505943-12506079,12506296-12506606
Length = 718
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 409 RGSRRFALTEGCDITGAFVCVVSTLRLLAGEEELLVY 519
RG + L C+++ F+C +STL + ELL++
Sbjct: 184 RGQIEYELYPLCNLSFFFICYLSTLLIFCNANELLLF 220
>01_07_0179 -
41814886-41815074,41815172-41815222,41815365-41815469,
41815852-41815945,41816056-41816150,41816581-41816700,
41816737-41816832,41817272-41817569,41817777-41817853,
41818932-41819447
Length = 546
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 406 WRGSRRFALTEGCDITGAFVCVVSTLRLLAGEEELL 513
W+ FA+ G D+ F+ + T LLA EE LL
Sbjct: 212 WQEESCFAIGAGTDVANLFISIKRTQLLLATEEWLL 247
>06_03_1275 +
28903961-28904123,28904225-28904322,28904406-28904550,
28904690-28904814,28904957-28905049,28905297-28905362,
28905459-28905524,28905790-28905870,28905947-28906123,
28906212-28906287,28906394-28906521,28906639-28906950
Length = 509
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -3
Query: 220 SAFLRTMLEYLRPTPLIAVIANITL 146
S+FL TM EY+R P A +AN T+
Sbjct: 255 SSFLGTMEEYIREAPRTAPVANKTV 279
>03_05_0830 + 28034179-28035492
Length = 437
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 97 LSGMTSDILVKFLTNVPKHNXRGNE 23
LSG T +IL KF ++PK + RG +
Sbjct: 160 LSGNTREILHKFTVDLPKKHGRGGQ 184
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 27.9 bits (59), Expect = 5.8
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = -2
Query: 257 FCAFASTLVKINVGFFENNVGVPPANTFDSRHRKHNLAFAIDVRIHDTKNMLKFVWNDQR 78
F F V F + N+G+ P S ++ I+V + NML F+ ++
Sbjct: 111 FIGFREQDVSSLTNFMQKNMGLSPDEKQLSVSGQNWGGIDINVTLSIVGNMLTFMVGSKQ 170
Query: 77 HFG*VSNQRSQTQXQGK 27
F SQTQ QGK
Sbjct: 171 AFEVSLADVSQTQMQGK 187
>07_03_1085 - 23851852-23853165
Length = 437
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 97 LSGMTSDILVKFLTNVPKHNXRGNE 23
LSG T ++L KF ++PK + RG +
Sbjct: 160 LSGNTREVLHKFTVDLPKKHGRGGQ 184
>03_01_0646 + 4742398-4742994,4743681-4744085
Length = 333
Score = 27.5 bits (58), Expect = 7.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 158 CDDGYQRCWPEVLQHCSQKSR 220
CDD Y+R W +L+ ++SR
Sbjct: 296 CDDSYRRAWSRLLRRLVRESR 316
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,971,521
Number of Sequences: 37544
Number of extensions: 306061
Number of successful extensions: 838
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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