Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_L10
         (737 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    26   0.37 
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    26   0.37 
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    26   0.37 
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.84 
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.84 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   1.5  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    23   3.4  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    22   5.9  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   7.9  

>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 581 PLNISEASISKQSEPAKKKLLFLRTNLTVMSQIHQQQKDQLLT 709
           P N+ E  ++ +SEP + K       LT+   I   +K+Q+LT
Sbjct: 14  PYNVLERPVANESEPLEVKF-----GLTLQQIIDVDEKNQILT 51


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 581 PLNISEASISKQSEPAKKKLLFLRTNLTVMSQIHQQQKDQLLT 709
           P N+ E  ++ +SEP + K       LT+   I   +K+Q+LT
Sbjct: 14  PYNVLERPVANESEPLEVKF-----GLTLQQIIDVDEKNQILT 51


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 581 PLNISEASISKQSEPAKKKLLFLRTNLTVMSQIHQQQKDQLLT 709
           P N+ E  ++ +SEP + K       LT+   I   +K+Q+LT
Sbjct: 14  PYNVLERPVANESEPLEVKF-----GLTLQQIIDVDEKNQILT 51


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 581 PLNISEASISKQSEPAKKKLLFLRTNLTVMSQIHQQQKDQLL 706
           P N+ E  ++ +SEP + K       LT+   I   +K+QLL
Sbjct: 14  PYNVLERPVANESEPLEVKF-----GLTLQQIIDVDEKNQLL 50


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 581 PLNISEASISKQSEPAKKKLLFLRTNLTVMSQIHQQQKDQLL 706
           P N+ E  ++ +SEP + K       LT+   I   +K+QLL
Sbjct: 14  PYNVLERPVANESEPLEVKF-----GLTLQQIIDVDEKNQLL 50


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/45 (24%), Positives = 18/45 (40%)
 Frame = +1

Query: 235 LENYMENYMQYKIMSSIK*IRMKPNCLPSKFDCRADRKRKFTHSE 369
           ++ YM    Q   +     + M+P C+  +  C   RK K    E
Sbjct: 232 IDMYMRRKCQECRLKKCLSVGMRPECVVPEVQCAVKRKEKKAQKE 276


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 157 PNTFFPSSYIPIAMKV*KR 213
           PN F P  Y PI +++  R
Sbjct: 31  PNNFLPERYKPIGVQIANR 49


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 441 LIFSRLFNFLDNSESLPFHKCRPRF 367
           LIF    +FLDN +++ + K    F
Sbjct: 225 LIFFATLDFLDNVDTIMYEKTNVTF 249


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/55 (18%), Positives = 24/55 (43%)
 Frame = -3

Query: 663 VKFVLRNNSFFFAGSDCLLILASDILRGDVAIHTCLAFVFLCWSYLDSFVITTPI 499
           +  +++   FF      +++L   ++R   +++   A   L W  L   V+T  +
Sbjct: 64  INLIIKQEEFFSPKIKRMVLLHKTLVRVAKSLNQVFAPQLLLWVLLGVMVVTVDL 118


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,826
Number of Sequences: 336
Number of extensions: 3370
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)