Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_L10
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57...    30   2.2  
07_03_1756 - 29239137-29239325,29239741-29240259,29240693-292408...    29   5.1  
06_03_1510 + 30665857-30666038,30666137-30666236,30666358-306664...    29   5.1  

>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
            579266-579370,579975-580028,580244-580344,580454-581423,
            582030-582203,582341-582643,582719-582856,582993-583247,
            584230-584370,585008-585289,585395-585540,585627-585690,
            585723-585799,586285-586301,587728-587867,587972-588029,
            588121-588218,588727-588776,589260-589743
          Length = 2630

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +2

Query: 575  TSPLNISEASISKQ---SEPAKKKLLFLRTNLTVMSQIHQQQKDQLL 706
            T PL ++    + Q    EP K +L  L+    V+S++H+Q++ QLL
Sbjct: 2302 TQPLPVAPLVFNYQRFSDEPLKNELERLKHTSNVLSKVHEQKRKQLL 2348


>07_03_1756 -
           29239137-29239325,29239741-29240259,29240693-29240800,
           29240856-29241155,29241730-29241831,29243042-29243209,
           29243878-29243991,29244184-29244288,29244372-29244502,
           29244794-29244918,29245001-29245172,29245277-29245316,
           29245636-29245722,29245803-29245868,29246412-29246510,
           29246714-29246836,29247066-29247107,29247195-29247260,
           29247362-29247553,29247672-29247737,29248839-29249141
          Length = 1038

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 575 TSPLNISEASISKQSEPAKKKLLFLRTN-LTVMSQIHQQQKDQLLTMGYRRRRL 733
           T P  ++ +   K  +  K K L  R N +  ++QI   Q DQ++ +G+RR ++
Sbjct: 153 TDPNIVTSSDSDKSIDDLKGKELLQRLNEVGTLAQITSIQGDQVVLLGHRRLKI 206


>06_03_1510 +
           30665857-30666038,30666137-30666236,30666358-30666438,
           30666514-30666618,30666722-30666916,30667440-30667501,
           30667870-30667885,30668007-30668068,30668933-30668951
          Length = 273

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -3

Query: 570 IHTCLAFVFLCWSYLDSFVITTPIFKWLDILTTRWQRYNN 451
           +H CLAF+F   ++L +F   + +     IL +RW R+++
Sbjct: 12  LHCCLAFLFKFLAFLQAFAAVSALLYAAWIL-SRWARHHH 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,940,692
Number of Sequences: 37544
Number of extensions: 309766
Number of successful extensions: 736
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)