Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_L09
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0660 + 10244962-10245606 30 1.4
02_01_0391 + 2838471-2838794,2838892-2839028,2841155-2841631,284... 30 1.4
01_05_0801 + 25353708-25353914,25354307-25354429,25355035-253552... 30 1.4
08_01_0841 + 8223768-8223871,8227749-8228745,8228779-8228828,822... 28 5.7
05_07_0248 - 28651807-28651908,28652001-28652061,28652164-286522... 28 5.7
05_03_0066 + 7980038-7981468 28 7.5
03_01_0093 - 745434-746057,746492-747112,747222-747791,747870-74... 28 7.5
02_05_0435 - 28958422-28958665,28959328-28959462,28960056-289602... 27 9.9
>03_02_0660 + 10244962-10245606
Length = 214
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +3
Query: 180 VRKIKEQYNYEIEKNPPE-WEYVKRLLPFTTI--PKIIPKDSYPSGWVPPKEE 329
V+ +KE+Y E+ K PP W + RL F P P + P V +EE
Sbjct: 78 VQTLKERYKRELAKPPPSGWRHFSRLQEFLLAGPPPGFPPKTMPPASVKKEEE 130
>02_01_0391 +
2838471-2838794,2838892-2839028,2841155-2841631,
2841719-2841999,2843009-2843051,2844094-2844148,
2845771-2845824,2846282-2846314,2846574-2846621,
2846885-2846950,2847286-2847426
Length = 552
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +3
Query: 408 MRKISIIRKIEGDIWLLNDEIKQYLKQKNKRY 503
MRK+ I+ + + IW+ ND +++ ++ NK Y
Sbjct: 178 MRKVKIMGREDKIIWIPNDNLRRLVRSLNKTY 209
>01_05_0801 +
25353708-25353914,25354307-25354429,25355035-25355205,
25355303-25355392,25355497-25355583,25355664-25355719,
25355812-25355905,25356032-25356144,25356211-25356283,
25356603-25356683,25356865-25356951,25357031-25357135,
25357279-25357385,25357481-25357541,25357931-25358158,
25359720-25360677,25360816-25360997,25361237-25361326,
25361422-25361709,25361844-25362056,25362560-25362784
Length = 1212
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +3
Query: 99 DLGAKLLPESQLALSSKH--YSSYGKSPFVRKIKEQYNYEIEKNPPEWEYVKRLLPFTTI 272
D G+++LP + L + K ++ Y + K N + + PP++E+ PF T
Sbjct: 322 DFGSEILPRAVLEHNVKACVFTEYWEDIGTIKSFFDANLALTEQPPKFEFYDPKTPFFTS 381
Query: 273 PKIIP 287
P+ +P
Sbjct: 382 PRYLP 386
>08_01_0841 +
8223768-8223871,8227749-8228745,8228779-8228828,
8228896-8230396
Length = 883
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 94 HLIWVQNYCRNHNWHYLQNITLVTENHRL 180
H+ WVQ + ++ +N+ LVTEN ++
Sbjct: 319 HVYWVQLLSKQESFERFKNLILVTENSKM 347
>05_07_0248 -
28651807-28651908,28652001-28652061,28652164-28652270,
28652369-28652473,28652556-28652642,28652814-28652894,
28653083-28653155,28653243-28653355,28653439-28653532,
28653633-28653688,28653779-28653865,28653975-28654064,
28654178-28654348,28654752-28654871,28654981-28655193
Length = 519
Score = 28.3 bits (60), Expect = 5.7
Identities = 24/132 (18%), Positives = 55/132 (41%), Gaps = 2/132 (1%)
Frame = +3
Query: 99 DLGAKLLPES--QLALSSKHYSSYGKSPFVRKIKEQYNYEIEKNPPEWEYVKRLLPFTTI 272
D G+++LP + + + + ++ Y + + N + + PP++E+ PF T
Sbjct: 323 DFGSEILPRALHEHNVQAYVFADYWEDIGTIRSFFDANMALCEQPPKFEFYDPKTPFFTS 382
Query: 273 PKIIPKDSYPSGWVPPKEEALNHPYFLSRTKNAELPIYLKITYRGMRKISIIRKIEGDIW 452
P+ +P S K+ ++H FL + ++ ++ + D++
Sbjct: 383 PRYLPPTK--SDKCRIKDAIISHGCFLRECTIEHSIVGVRSRLNSACELKNTMMMGADLY 440
Query: 453 LLNDEIKQYLKQ 488
DEI + L +
Sbjct: 441 ETEDEISRLLSE 452
>05_03_0066 + 7980038-7981468
Length = 476
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 123 ESQLALSSKHYSSYGKSPFV--RKIKEQYNYEIEKNPPEWEYVKRL 254
E QLAL+ HY + GK+ V RK+KE+ ++E N E K L
Sbjct: 373 EGQLALTLLHYGNAGKAKKVLDRKLKEK---KVESNSTVTEKSKEL 415
>03_01_0093 -
745434-746057,746492-747112,747222-747791,747870-747948,
748258-748331,748385-748387
Length = 656
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 423 IIRKIEGDIWLLNDEIKQYLKQKNKRYVETRVHEVA 530
I++ + GD WL + KQY + +V T++ E A
Sbjct: 123 IVKALNGDAWLETTDGKQYSPSQIGAFVLTKMKETA 158
>02_05_0435 -
28958422-28958665,28959328-28959462,28960056-28960211,
28960287-28961092,28961177-28961254,28961809-28961883,
28962127-28962215,28962735-28962843,28963007-28963086,
28963739-28963794,28963876-28963958,28964049-28964118,
28964200-28964309,28964395-28964548,28965183-28965382,
28966175-28966348,28969080-28969277,28970564-28970791
Length = 1014
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +3
Query: 132 LALSSKHYSSYGKSPFVRKIKEQYNYEIEKNPPEWEYVKRLLP--FTTIPKI 281
LA S + SS K PFV ++ K PE++Y L P F T P +
Sbjct: 186 LAARSSNLSSVRKRPFVARLTTDIVQTFGKCNPEFKYSDSLNPKRFLTNPSV 237
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,228,162
Number of Sequences: 37544
Number of extensions: 317068
Number of successful extensions: 772
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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