Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_L07
(628 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0418 - 17406313-17407419 35 0.046
07_03_1467 - 26736859-26736868,26737769-26738439 33 0.14
06_01_0782 - 5848381-5849394,5851143-5851255,5851337-5851440,585... 31 0.57
09_04_0414 - 17393780-17394826 31 0.75
12_01_0904 + 8791474-8792261,8792935-8793037,8794009-8794055,879... 31 0.99
08_02_1369 - 26445725-26445812,26446443-26446529,26446720-264469... 30 1.3
07_03_1465 - 26729872-26730909 30 1.3
10_08_0004 + 14022511-14022670,14022740-14023049,14023193-140234... 30 1.7
05_03_0614 - 16206005-16206586,16207585-16207608,16209746-162098... 29 2.3
09_04_0413 + 17372852-17373787 29 3.0
08_02_0996 - 23404595-23405596 29 3.0
07_01_0775 + 5976883-5978109 29 3.0
04_03_0167 - 12178587-12179203,12179243-12179375,12179540-121797... 29 3.0
09_04_0410 + 17362751-17363698 29 4.0
07_01_0447 - 3377666-3378673 29 4.0
08_01_0820 - 7957563-7957646,7958036-7958134,7958233-7959729 28 5.3
11_02_0041 - 7669692-7670312 28 7.0
09_04_0411 + 17366559-17367497 28 7.0
07_01_0449 - 3392512-3393504 27 9.2
03_03_0206 + 15447054-15447181,15448243-15448298,15448373-154485... 27 9.2
01_06_0922 - 33022709-33023545 27 9.2
>09_04_0418 - 17406313-17407419
Length = 368
Score = 35.1 bits (77), Expect = 0.046
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 12/88 (13%)
Frame = +3
Query: 252 KLRFQPPKLIRQYK----ERVDASKEGPACPLPVPPTYYVDEDC-------LRINVYTPS 398
++ F P ++R YK ER D ++ P P P V +D + +Y P
Sbjct: 54 EIEFDMPGVLRMYKDGRVERFDGTQTVPPSPSGDPANGVVSKDVVLDPAAGISARLYLPP 113
Query: 399 N-NVSKPLPVIFYIHAGAFYSMTGRSDL 479
K LPV+ + H GAF T S L
Sbjct: 114 GVEPGKKLPVVLFFHGGAFLVHTAASPL 141
>07_03_1467 - 26736859-26736868,26737769-26738439
Length = 226
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Frame = +3
Query: 384 VYTPSNNV---SKPLPVIFYIHAGAFYSMTGRS---DLAGPHYLLDRDLVLVTINYRL 539
V++P+++ S PLPV+ Y H G F +T S D + V+V++NYRL
Sbjct: 87 VFSPASSSAVESPPLPVVVYFHGGGFALLTAASSQYDALCRRLCRELRAVVVSVNYRL 144
>06_01_0782 -
5848381-5849394,5851143-5851255,5851337-5851440,
5851584-5851660,5851740-5852132,5852267-5852482,
5852826-5852923,5853503-5853637,5853745-5853811,
5853999-5854094,5854555-5854683
Length = 813
Score = 31.5 bits (68), Expect = 0.57
Identities = 40/126 (31%), Positives = 51/126 (40%), Gaps = 8/126 (6%)
Frame = +3
Query: 234 AEPPVGKLRFQPPKLIRQYKE-RVDASKEGPACPLPVPP-TYYVDED----CLRINVYTP 395
A P ++ F + QYK RV P P P T V D R VY P
Sbjct: 494 AMDPDSEVAFDFQPYLCQYKSGRVFRLGGDPTVPAGTDPVTRVVSRDIHAGAARARVYLP 553
Query: 396 SNNV--SKPLPVIFYIHAGAFYSMTGRSDLAGPHYLLDRDLVLVTINYRLGSLGFISTGD 569
++ LPV+ Y H G F +TG H L+ DLV R G++G +S
Sbjct: 554 PGAAVSTEKLPVVVYFHGGGF--VTGSPARPSTHAYLN-DLVA-----RAGAIG-VSVYY 604
Query: 570 SLAPGN 587
LAP N
Sbjct: 605 RLAPEN 610
>09_04_0414 - 17393780-17394826
Length = 348
Score = 31.1 bits (67), Expect = 0.75
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +3
Query: 372 LRINVYTPSNNVSKPLPVIFYIHAGAFYSMTGRSDL--AGPHYLLDRDLVL-VTINYRL 539
+R +Y PS + +PV+ Y H GAF + + + A + L + VL V++NYRL
Sbjct: 87 VRARLYLPSFRATAKVPVLLYFHGGAFVVESAFTPIYHAYLNTLAAKAGVLAVSVNYRL 145
>12_01_0904 +
8791474-8792261,8792935-8793037,8794009-8794055,
8795180-8795717
Length = 491
Score = 30.7 bits (66), Expect = 0.99
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +3
Query: 387 YTPSNNVSKPLPVIFYIHAGAFYSMTGRSDLAGPHYLLDR-----DLVLVTINYRL 539
Y P+ + LPVI H GAF TG +D A R D ++V + YRL
Sbjct: 148 YLPTARSGRRLPVIVQFHGGAF--ATGAADSAANDAFCRRVARLCDAIVVAVGYRL 201
>08_02_1369 -
26445725-26445812,26446443-26446529,26446720-26446928,
26447501-26447583,26447672-26447720,26447800-26447959,
26448795-26448891,26449424-26449535,26449637-26449702,
26450135-26450206,26450413-26450487,26451139-26451266,
26451551-26451772,26452084-26452355,26452447-26452543,
26452633-26452738,26454834-26455220
Length = 769
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = -3
Query: 464 RHGVERSGVNVKYHRERLRDIVTRSIHVDSQAVFVDVVSGRDGQRAGRALFARVNAFFV 288
R GV R ++VK+H E L +V+ S ++ + +++SGR Q G + AF V
Sbjct: 404 RQGV-RKVLDVKFHPEGLPQLVSCSNEAPNELLLFNLLSGRATQLRGHNTKIQATAFAV 461
>07_03_1465 - 26729872-26730909
Length = 345
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +3
Query: 393 PSNNVSKPLPVIFYIHAGAFYSMTGRS---DLAGPHYLLDRDLVLVTINYRL 539
P+N + LPV+ Y H G F + S D V+V++NYRL
Sbjct: 82 PTNTAAVKLPVVVYFHGGGFVLFSAASRPYDALCRRISRGVGAVVVSVNYRL 133
>10_08_0004 +
14022511-14022670,14022740-14023049,14023193-14023414,
14023497-14023721,14024045-14024119,14024619-14024754,
14025124-14025251,14025337-14025419,14025505-14025626,
14025732-14025810,14026252-14026420,14026562-14026622,
14026729-14026851,14027675-14027914,14028045-14028113,
14028353-14028429,14028527-14028593
Length = 781
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +3
Query: 420 PVIFYIHAG--AFYSMTGRSDLAGPHYLLDRDLVLVTINYRLGSLGFISTGDSLAPGNNG 593
P I +H G Y + LA +L + L+ +NYR GSLGF PGN G
Sbjct: 533 PTIVVLHGGPHTVYPSSYSKSLA---FLYSQGYNLLVVNYR-GSLGFGEEALQSLPGNIG 588
Query: 594 LKD 602
+D
Sbjct: 589 SQD 591
>05_03_0614 -
16206005-16206586,16207585-16207608,16209746-16209879,
16210703-16210832
Length = 289
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = +1
Query: 331 LCPSLPLTTSTKTA*ESTCILLVTMSRSLSL*YFTFTP 444
LCPS PL+ + + ST LVT RS SL TF P
Sbjct: 142 LCPSTPLSPMSSVSCSSTASTLVT--RSCSLTSTTFAP 177
>09_04_0413 + 17372852-17373787
Length = 311
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +3
Query: 357 VDEDC-LRINVYTPSN-NVSKPLPVIFYIHAGAF 452
VD D L + V+ P+ + SK LPV+ + H GAF
Sbjct: 50 VDADTGLSVRVFLPARPDPSKKLPVLVFFHGGAF 83
>08_02_0996 - 23404595-23405596
Length = 333
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +3
Query: 372 LRINVYTPSNNVSKPLPVIFYIHAGAFYSMTGRSDLAGPHYL----LDRDLVLVTINYRL 539
L + +Y P + + LPV+ Y H GAF + D +YL + V++NYRL
Sbjct: 84 LAVRLYRPKHRGGR-LPVLIYFHGGAFV-VESAFDPVYHNYLNALAAKAGAIAVSVNYRL 141
>07_01_0775 + 5976883-5978109
Length = 408
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 507 LCPASSEARPGRSCPSWSRTLRRECKISQGEASRHC 400
LC S + R C S + T +R C+ S+ E RHC
Sbjct: 6 LCRESDD-EDERHCSSSTNTKKRACRESEEEDERHC 40
>04_03_0167 -
12178587-12179203,12179243-12179375,12179540-12179726,
12179800-12179963,12180016-12180234
Length = 439
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = -2
Query: 363 RRRSKWEGRAEGRPGPLCSRQRVLCIAELVLGAGIVVSRPVAQRILCPYRPGTAFRDV 190
R+R +A RP L SR R + A ++LG V +PV +R PGT ++V
Sbjct: 124 RQRGIKGHKAPSRPWTLTSRVRSVA-ARIILGT--TVRKPVRRRCTWATTPGTVHKEV 178
>09_04_0410 + 17362751-17363698
Length = 315
Score = 28.7 bits (61), Expect = 4.0
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 13/106 (12%)
Frame = +3
Query: 261 FQPPKLIRQYKE-RVDASKEGPACPLPVPP-TYYVDEDC-------LRINVYTPS-NNVS 410
F+ P R YK ++D P P V T +D L + +Y P S
Sbjct: 12 FEAPAHFRIYKSGKMDRLHRPPCLPAGVDEATGVASKDVVIDAGTGLSVRLYLPKIQEPS 71
Query: 411 KPLPVIFYIHAGAFYSMTGRSDLAGPH---YLLDRDLVLVTINYRL 539
K LPV+ + H G F + S + + +V+V+++YRL
Sbjct: 72 KKLPVLVFFHGGGFLIESADSSTYHNYVNPFAAAAGVVVVSVDYRL 117
>07_01_0447 - 3377666-3378673
Length = 335
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +3
Query: 372 LRINVYTPSNNVSKP--LPVIFYIHAGAF 452
LR+ +Y P+N+ + LPV+ Y H G F
Sbjct: 63 LRLRMYAPANHGGEEGKLPVLVYFHGGGF 91
>08_01_0820 - 7957563-7957646,7958036-7958134,7958233-7959729
Length = 559
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 153 SQSGSFLGSWMETRRGKQFQAYRGI--RYAEPP 245
S +GSF+ W RG+ A R I R+A+PP
Sbjct: 180 SSAGSFVWDWPSLARGEGIVAPRSIGRRFADPP 212
>11_02_0041 - 7669692-7670312
Length = 206
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 467 QERPGRASLLAGQRSGARHHQLQARLFRFYKHRRLP 574
+ R G A G+R G R H+ + RF++ R+P
Sbjct: 114 RRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMP 149
>09_04_0411 + 17366559-17367497
Length = 312
Score = 27.9 bits (59), Expect = 7.0
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Frame = +3
Query: 372 LRINVYTPS---NNVSKPLPVIFYIHAGAFYSMTGRSDLAGPHYLLD-----RDLVLVTI 527
L + V+ P K LPV+ Y H G F + +D A H L+ +++V++
Sbjct: 55 LFVRVFLPKVQDQETGKKLPVLVYFHGGGF--IIESADSATYHNYLNSVAAAAGVLVVSV 112
Query: 528 NYRL 539
NYRL
Sbjct: 113 NYRL 116
>07_01_0449 - 3392512-3393504
Length = 330
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 372 LRINVYTPSNNVSKPLPVIFYIHAGAF 452
L + +Y P LPV FY H G F
Sbjct: 54 LGVRLYRPRERGGGRLPVFFYYHGGGF 80
>03_03_0206 +
15447054-15447181,15448243-15448298,15448373-15448515,
15448630-15448827,15448901-15449100,15449585-15449684,
15449769-15450350,15450434-15450556,15451028-15451108,
15451188-15451495,15451577-15451816,15452261-15452345,
15452429-15452606,15453053-15453227,15453826-15453982
Length = 917
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Frame = +1
Query: 457 P*RAGATW---PGLTTCWTEIWC 516
P R+GA+W PGLT+ W + C
Sbjct: 216 PERSGASWHVDPGLTSAWNTLLC 238
>01_06_0922 - 33022709-33023545
Length = 278
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +3
Query: 228 RYAEPPVGKLRFQPPKLIRQYKERVDASKEGPACPLPVPP 347
R A P L+ +PP +R RV + P P P PP
Sbjct: 194 RRAASPAPSLQRKPPVPVRPSPRRVQEAPPSPLEPPPPPP 233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,254,300
Number of Sequences: 37544
Number of extensions: 454583
Number of successful extensions: 1344
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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