Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_L05
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    29   0.59 
SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    28   1.0  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    27   2.4  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    26   4.2  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    25   7.3  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   7.3  
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu...    25   9.6  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    25   9.6  

>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1125

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = +3

Query: 375  ELQTICQMYWHRIYNLEGDKYELERAIEIRKMEISDLNSQVNDLRGKFVKPTLKKVSKYE 554
            E Q +C+     + N +   Y+L+ +      E S L+ QVNDL  +  K T +K+S+ +
Sbjct: 895  ESQRLCEGRTKELLNSQQKLYDLKHSYSSVMTEKSKLSDQVNDLTEQ-AKITQRKLSEVQ 953


>SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 77

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +3

Query: 372 AELQTICQMYWHRIYNLEGD--KYELERAIEIRKMEISDLNSQ 494
           +E++  C+MY  +IYN+E D  +Y  E  +  + +E   LN +
Sbjct: 29  SEIEKECEMYAVKIYNVERDIQRYRHEAQLLSKVLEKKGLNKE 71


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 464 ENGDLRPELPS-QRPQRQIRQAHTKEGFQIRKQIRQAPEEGRRIQLP*PIEGRE 622
           ENG+ +  LP  +RPQ+ +R    K     +   ++  E   R++   P  GRE
Sbjct: 238 ENGEKQFSLPEPRRPQKPMRTTERKASLNTKDLYQEVEEVMARLRGRMPNSGRE 291


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 628 FFFTTFNWLRKLNSAAFFWSLANLFSYLETFFSV 527
           FFF T  +L KLNS      ++ L+++L    SV
Sbjct: 148 FFFLTILFLSKLNSVPLNKKISYLYTFLLAIVSV 181


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 351 NIDDANEAELQTICQMYWHRIYNLEGDKYELERAIEIRKMEISDLNSQVN 500
           NI   NE E+  IC  YW +   L    YE     E++++ +S++N  +N
Sbjct: 344 NISRINEREIFKICLEYWSK---LVAQLYE-----EMQQIPMSEMNPLLN 385


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 411 IYNLEGDKYELERAIEIRKMEISDLNSQVNDLRGK 515
           I  L+ D  + E A+   K+E  +L   +++L+GK
Sbjct: 691 IQTLKEDLRKSEEALRFSKLEAKNLREVIDNLKGK 725


>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
           Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 444 ERAIEIRKMEISDLNSQVNDLRGKFVKPTLKKVSKYENK 560
           +RA  I K E  D+         KF +  LKK+  YE K
Sbjct: 534 QRAQLIEKAERIDIKGNEEQYLQKFEQAELKKLYSYEEK 572


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -1

Query: 455 DRSF*FIFIPLKVVYSVPVHLTYR 384
           +R+F  I+ P K+VY +P+++T +
Sbjct: 560 ERNFQTIYHPNKIVYMLPLNITQK 583


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,998,308
Number of Sequences: 5004
Number of extensions: 31060
Number of successful extensions: 104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)