Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_L04
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      28   1.3  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.3  
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    27   3.1  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    27   3.1  
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha...    26   7.1  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   7.1  
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    25   9.4  

>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -1

Query: 529 AASPPASEGAADSVTVEPRDLASAACARFFFRISSKSLLL 410
           A +P    GA D + VE  D  + AC+ F  R    SLLL
Sbjct: 17  AINPSTLSGAIDVIVVEQED-KTLACSPFHVRFGKFSLLL 55


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 19/73 (26%), Positives = 34/73 (46%)
 Frame = +1

Query: 517 VATLPNRITVVRNVPTHQPLPAKILLPPHRNLPEEDSTDHHQEPWNLKPXNRTSPFNXHD 696
           V + P+  +V    P+  P+P +  +  H N+ +E  +     P  + P   TS  + H+
Sbjct: 370 VPSAPSNESVSSAAPSKIPVPEEASINEHSNITDEAVS----LPEPVYPNAPTSAVSVHN 425

Query: 697 PTGSPDEETIKNA 735
           PT S + E  + A
Sbjct: 426 PTISDEAEPTERA 438


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
 Frame = -2

Query: 696 IVXVERTRSVXRLQVPR---LLMMVC*IFLWKV--SVRGQEYLRRQRLVCWHVSYHCNSI 532
           ++ VE+        VP    L  M C   L+    ++  ++ ++   L+ +HVS  C S+
Sbjct: 48  LITVEKIDVFINAMVPSTFALFCMACPYLLYTAVDALLNKDVIQMSALLIFHVSLFCLSV 107

Query: 531 WQRRHQHRKEPRILLL 484
            Q      K+PR + L
Sbjct: 108 VQYFQIFSKDPRAIFL 123


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 512 CWWRRCQIELQW*ETCQHTSRCRRRYSCPR 601
           CWWR C  E Q  ET Q ++  +  Y  PR
Sbjct: 420 CWWRICVDEAQMVETSQ-SNVAQMIYRIPR 448


>SPAC19D5.02c |||peroxisomal membrane protein Pex22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 226 ACSPKGNRPQQPQHLRHRNTQSMKTK 303
           A   KG+RP +PQ  +  N Q  KT+
Sbjct: 148 AVRKKGSRPSKPQKEKQGNKQGSKTE 173


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 448  RFFFRISSKSLLLLNGLTPPAISFLPSVED 359
            R  FRIS   LLLL  +   ++S + S +D
Sbjct: 1544 RLLFRISVYDLLLLQSIAQASVSVISSYKD 1573


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/61 (22%), Positives = 26/61 (42%)
 Frame = +1

Query: 514 LVATLPNRITVVRNVPTHQPLPAKILLPPHRNLPEEDSTDHHQEPWNLKPXNRTSPFNXH 693
           LV  L N +  ++ + T + L        H++       ++H +  N +P  RT P+   
Sbjct: 32  LVKKLSNLMARIKKIFTQEELKQIPCPYDHKHTIVRHRLEYHLKRCNARPVERTDPYYKK 91

Query: 694 D 696
           D
Sbjct: 92  D 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,821
Number of Sequences: 5004
Number of extensions: 56975
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)