Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_L04
(790 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46242-12|CAA86332.1| 690|Caenorhabditis elegans Hypothetical p... 32 0.54
Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical p... 32 0.54
AF256467-1|AAF71546.1| 690|Caenorhabditis elegans SEL-5B serine... 32 0.54
AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A serine... 32 0.54
U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z83232-4|CAB05756.2| 891|Caenorhabditis elegans Hypothetical pr... 29 2.9
AC006630-5|AAK68323.1| 335|Caenorhabditis elegans Collagen prot... 29 2.9
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p... 29 3.8
Z70782-4|CAA94842.1| 347|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z99942-1|CAB17068.2| 454|Caenorhabditis elegans Hypothetical pr... 29 5.0
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin... 29 5.0
U39655-3|AAA80409.2| 718|Caenorhabditis elegans Fatty acid coa ... 29 5.0
L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans chrom... 28 6.6
U97008-7|AAB52313.1| 385|Caenorhabditis elegans Temporarily ass... 28 8.8
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 28 8.8
AC006671-6|AAF39916.1| 411|Caenorhabditis elegans Hypothetical ... 28 8.8
>Z46242-12|CAA86332.1| 690|Caenorhabditis elegans Hypothetical
protein F35G12.3b protein.
Length = 690
Score = 31.9 bits (69), Expect = 0.54
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +1
Query: 529 PNRITVVRNVPTHQPLPAKILLPPHRNLPEEDSTD 633
P TVV NVP+ P+P L PH LP + STD
Sbjct: 407 PKATTVVPNVPSISPVPPVGL--PHLRLPSKGSTD 439
>Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical
protein F35G12.3a protein.
Length = 1077
Score = 31.9 bits (69), Expect = 0.54
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +1
Query: 529 PNRITVVRNVPTHQPLPAKILLPPHRNLPEEDSTD 633
P TVV NVP+ P+P L PH LP + STD
Sbjct: 407 PKATTVVPNVPSISPVPPVGL--PHLRLPSKGSTD 439
>AF256467-1|AAF71546.1| 690|Caenorhabditis elegans SEL-5B
serine/threonine kinase protein.
Length = 690
Score = 31.9 bits (69), Expect = 0.54
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +1
Query: 529 PNRITVVRNVPTHQPLPAKILLPPHRNLPEEDSTD 633
P TVV NVP+ P+P L PH LP + STD
Sbjct: 407 PKATTVVPNVPSISPVPPVGL--PHLRLPSKGSTD 439
>AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A
serine/threonine kinase protein.
Length = 1077
Score = 31.9 bits (69), Expect = 0.54
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +1
Query: 529 PNRITVVRNVPTHQPLPAKILLPPHRNLPEEDSTD 633
P TVV NVP+ P+P L PH LP + STD
Sbjct: 407 PKATTVVPNVPSISPVPPVGL--PHLRLPSKGSTD 439
>U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical
protein ZK84.1 protein.
Length = 801
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/80 (25%), Positives = 29/80 (36%)
Frame = +3
Query: 450 AQAAEAKSRGSTVTEXXXXXXXXXXXXKSNYSGKKRANTPAVAGEDTPAPAPKPSRGRFN 629
A+AA S+V E + + PA A E+TPAPAP
Sbjct: 536 AEAAAGYDAPSSVPEETPAPAPAADETPAPAPAAEETPAPAPAAEETPAPAPAAEETPAT 595
Query: 630 RPSSRAVEPEAEXQNESVQP 689
P++ A +E+ P
Sbjct: 596 APAAEETPAPAPAADETPAP 615
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 567 PAVAGEDTPAPAPKPSRGRFNRPSSRAVEPEAEXQNESVQP 689
PA A E+TPAPAP + P++ A E+ P
Sbjct: 683 PAQAAEETPAPAPAAEETPASAPAAEETPAPAPAAEEAPAP 723
>Z83232-4|CAB05756.2| 891|Caenorhabditis elegans Hypothetical
protein K04B12.3 protein.
Length = 891
Score = 29.5 bits (63), Expect = 2.9
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Frame = +1
Query: 400 DRSGVTMIYWKS*---RKSGHK-----LLKPNLAVQQ*QNPRLLPMLVATLPNRITVVRN 555
D +G +IY K R+S H+ +L+ +L +++ R LP+ A L V
Sbjct: 752 DYNGEPLIYSKGSNVIRESAHRSSLGNVLQADLPIRRPCTCRKLPLQSAQLQKVHVVTPK 811
Query: 556 VPTHQPLPAKILLPPHRNL 612
P H + K+L+P H +
Sbjct: 812 APVHITIDPKVLIPTHEGV 830
>AC006630-5|AAK68323.1| 335|Caenorhabditis elegans Collagen protein
165 protein.
Length = 335
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 543 SGKKRANTPAVAGEDTPAPAPKPSRGRFNRPSSRAVEP 656
+GK+ PA + APAP PS G +++PS+ P
Sbjct: 94 AGKEDYGAPATE-QPYNAPAPSPSHGGYDQPSNNGYGP 130
>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
protein Y49E10.19 protein.
Length = 1159
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 576 AGEDTPAPAPKPSRGRF--NRPSSRAVEPEAEXQNES 680
+G TP+P +P R NRP + +E E E ++ES
Sbjct: 635 SGAGTPSPYREPPLQRLEKNRPPAEVIEEETENEDES 671
>Z70782-4|CAA94842.1| 347|Caenorhabditis elegans Hypothetical
protein R04B5.6 protein.
Length = 347
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -1
Query: 586 SSPATAGVLARFLPL*FDLAASPPASEGAADSVTVEPRDLASAACARFFFRISSKSLLL 410
++P G L+RF+ D P + D +EP +A AC R ++ K L+L
Sbjct: 117 ATPPVNGALSRFVVHDADFCFKLPDNLSFEDGALLEPLSVAIQACRRGTVQMGQKILVL 175
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
F54B3.1b protein.
Length = 3394
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 583 KILLPPHRNLPEEDSTDHHQEP 648
K+L+P HR + + D D HQ P
Sbjct: 1814 KLLVPEHRKISQFDENDKHQSP 1835
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
F54B3.1a protein.
Length = 3396
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 583 KILLPPHRNLPEEDSTDHHQEP 648
K+L+P HR + + D D HQ P
Sbjct: 1814 KLLVPEHRKISQFDENDKHQSP 1835
>Z99942-1|CAB17068.2| 454|Caenorhabditis elegans Hypothetical
protein H13N06.2 protein.
Length = 454
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +3
Query: 579 GEDTPAPAPKPSRGRFNRPSSRAVEPEAEXQNESV 683
G PAP P+ S PSS E EA QN +V
Sbjct: 101 GPHPPAPPPQSSAESSGLPSSSEQEEEASAQNTTV 135
>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
protein protein16, isoform d protein.
Length = 1030
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 223 EACSPKGNRPQQPQHLRHRNTQSM 294
E +P N+PQQPQ+ +H +QS+
Sbjct: 315 EQVNPGQNQPQQPQYQQHPRSQSV 338
>U39655-3|AAA80409.2| 718|Caenorhabditis elegans Fatty acid coa
synthetase familyprotein 17 protein.
Length = 718
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 516 QHRKEPRILLLLNREIWLQQLVPAFSLGFPVNHCYS 409
Q KEP IL RE W+ + + FP+ Y+
Sbjct: 159 QQEKEPIILFAETREEWMTTALACMKMNFPIATMYA 194
>L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans
chromodomain proteinprotein 1 protein.
Length = 304
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 549 KKRANTPAVAGEDTPAPAPKPSRGRFNRPSSRAVEPEAEXQNE 677
K A+TPA + P P PK S + R + + P+++ E
Sbjct: 89 KASASTPARGAKAAPKPPPKKSPPKRQRLAGGDIRPDSDTDEE 131
>U97008-7|AAB52313.1| 385|Caenorhabditis elegans Temporarily
assigned gene nameprotein 293 protein.
Length = 385
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 584 FAGNGWCVGTFLTTVIRFGSVATS 513
+AGNG+C TF T R S AT+
Sbjct: 358 WAGNGFCTNTFYTEAQRKASCATT 381
>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
protein Y8A9A.2 protein.
Length = 1360
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +1
Query: 457 LLKPNLAVQQ*QNPRLLPMLVATLPNRITVVRNVPTHQPLPAKILLPPH--RNLP 615
LL+P+L Q ++ P+++ L + +R++P H P+ + LP + R+LP
Sbjct: 376 LLQPSLPQNQLRSLLAHPLILPRLSQQQNQLRSLPAHPPILLQPSLPQNQLRSLP 430
>AC006671-6|AAF39916.1| 411|Caenorhabditis elegans Hypothetical
protein K08A2.1 protein.
Length = 411
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +1
Query: 508 PMLVATLPNRITVVRNVPTHQPLPAKILLPPHRNLPEEDSTDHHQEP 648
P V T P+ + T QP P + PP R LP + H EP
Sbjct: 259 PSPVPTAPD--VTSESPATPQPSPPAVTPPPPRLLPAATTESHQTEP 303
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,436,269
Number of Sequences: 27780
Number of extensions: 339376
Number of successful extensions: 1311
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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