Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_L04
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   4.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.7  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 429 EILKKKRAQAAEAK 470
           E+L KKR++ AEAK
Sbjct: 135 EVLNKKRSKKAEAK 148


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 305 TFVFILCVFLW 273
           T VF+ C+F+W
Sbjct: 217 TKVFVTCIFIW 227


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 305 TFVFILCVFLW 273
           T VF+ C+F+W
Sbjct: 217 TKVFVTCIFIW 227


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,875
Number of Sequences: 438
Number of extensions: 4726
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)