Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_L03
(455 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0049 - 10945765-10945893,10946042-10946110,10947278-10947946 30 0.77
03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,813... 30 1.0
07_01_0127 - 955244-956278,956397-956651 29 1.8
04_04_0500 - 25677767-25680850 28 4.1
10_07_0162 - 13713504-13714754,13716445-13716522 27 5.4
08_01_0410 + 3661304-3661383,3661494-3661673,3661757-3661870,366... 27 5.4
08_02_1455 + 27230134-27231110,27231195-27231327,27231417-272315... 27 7.2
01_01_1069 - 8420454-8420670,8421272-8421447,8421556-8421738,842... 27 7.2
11_01_0583 + 4636832-4637521 27 9.5
>06_02_0049 - 10945765-10945893,10946042-10946110,10947278-10947946
Length = 288
Score = 30.3 bits (65), Expect = 0.77
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -3
Query: 204 WAEAAMLPAIIPDALKPSRGATIGIKNPPMQRTAPPTMLTIRASEKSHDP 55
WA + A++P ++ RGA + I + Q + TI ++ K H P
Sbjct: 176 WAVTEVTAAVLPGMVERGRGAVVNIGSASSQAIPSFPLCTIYSATKRHAP 225
>03_02_0400 -
8135283-8135490,8136047-8136213,8136289-8136477,
8136560-8136655,8136746-8136874,8136947-8137123,
8137256-8137366,8138592-8138792,8139022-8139186,
8139293-8139527,8139618-8139745,8139833-8139928,
8140017-8140112,8140252-8140325,8140393-8140462,
8140556-8140665,8140753-8140906,8141040-8141155,
8141259-8141379,8141464-8141641,8142331-8142489,
8142619-8142732,8142821-8143000,8143098-8143177
Length = 1117
Score = 29.9 bits (64), Expect = 1.0
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = -2
Query: 313 YLFLTNLCNVLRSWCYHGGGSQL*YNASGH*IPVIRLG*SCNASRHYS--RCAEAEQRCH 140
++F T L +++W Y GS++ Y+A GH + S + SR +S + E
Sbjct: 517 FIFSTALDGKIKAWLYDNLGSRVDYDAPGHWCTTMAY--SADGSRLFSCGTSKDGESHLV 574
Query: 139 DWDQKPSHAK 110
+W++ K
Sbjct: 575 EWNESEGAVK 584
>07_01_0127 - 955244-956278,956397-956651
Length = 429
Score = 29.1 bits (62), Expect = 1.8
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Frame = +1
Query: 40 SYCDLRIMGFFTC---PNSQHRRRSRSLHGRVFDPNRGTSARLQRIGNNGGKHCSFSPVV 210
S DL + G + C P S H + L GR + + L ++ + G ++ P++
Sbjct: 70 SNIDLVLKGKYKCIQEPYSMHLLLDKCLFGRQMEMEHIMNFPL-KVDSPGAENPGVLPII 128
Query: 211 LREFNGRKHYIKVDCRRHDSTNSVRHYISLSKTD 312
R G+ I+ DC N + S D
Sbjct: 129 CRRKAGKSTLIEHDCNDERVCNHFSQIVCFSDND 162
>04_04_0500 - 25677767-25680850
Length = 1027
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 79 PNSQHRRRSRSLHGRVFDPNRGTSARLQRIGNN 177
P ++H + R+LHGR+ RG S L R+G++
Sbjct: 67 PRARHSQTCRALHGRIL---RGGSPLLGRLGDS 96
>10_07_0162 - 13713504-13714754,13716445-13716522
Length = 442
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 121 RVFDPNRGTSARLQRIGNNGGKHCSFSPVVLREFNGR 231
RV+DPN GT A+ ++ G +F L NG+
Sbjct: 339 RVYDPNTGTWAKFMDSKHHLGSSRAFEAAALVTLNGK 375
>08_01_0410 +
3661304-3661383,3661494-3661673,3661757-3661870,
3661975-3662133,3662193-3662243,3662838-3663018,
3663102-3663228,3663322-3663431,3663529-3663667,
3663767-3663876,3664002-3664071,3664247-3664320,
3664458-3664553,3664682-3664777,3665041-3665168,
3665422-3665656,3665743-3665910,3666274-3666381,
3666468-3666617,3666905-3667015,3667118-3667297,
3667427-3667555,3667819-3667914,3668108-3668293,
3668431-3668603,3668720-3668921
Length = 1150
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 322 SSSYLFLTNLCNVLRSWCYHGGGSQL*YNASGH 224
S ++F T + +++W Y GS++ Y+A GH
Sbjct: 527 SIQFIFSTAIDGKIKAWLYDCLGSRVDYDAPGH 559
>08_02_1455 +
27230134-27231110,27231195-27231327,27231417-27231501,
27233372-27233571
Length = 464
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +1
Query: 10 DEFVLYILVRSYCDLRIMGFFTCPNSQHRRRSRSLHG 120
D+F LY LV SY DL M +H R G
Sbjct: 176 DDFALYDLVNSYMDLDGMEALNSSEERHEDRDSRASG 212
>01_01_1069 -
8420454-8420670,8421272-8421447,8421556-8421738,
8421885-8421980,8422064-8422192,8422266-8422445,
8422524-8422634,8422714-8422869,8422983-8423078,
8423160-8423327,8423402-8423642,8423724-8423851,
8424042-8424134,8424214-8424309,8424431-8424523,
8424741-8424850,8424999-8425134,8425215-8425315,
8426029-8426152,8426237-8426411,8426523-8426681,
8427423-8427536,8427669-8427848,8428926-8429005
Length = 1113
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 322 SSSYLFLTNLCNVLRSWCYHGGGSQL*YNASG 227
S ++F T+L +++W Y GS++ Y+A G
Sbjct: 485 SIQFIFSTSLDGKIKAWLYDHMGSRVDYDAPG 516
>11_01_0583 + 4636832-4637521
Length = 229
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -3
Query: 237 MLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQRTAPP 97
+L A KF Y W+ ++ A++P+ L + AT + +P + A P
Sbjct: 182 VLLATKFN-YIWSLLDLMEAVLPEYLSETGTATTTVPSPDVAAAAAP 227
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,371,435
Number of Sequences: 37544
Number of extensions: 243881
Number of successful extensions: 585
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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