Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_L02
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family...    26   2.2  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   6.8  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    24   9.0  

>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 164 VQARVWEKLRSWFRRCLRVWSGQR 93
           V +++W+KL  W      +W+G+R
Sbjct: 348 VVSQLWDKLERWMENRWPLWNGRR 371


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 249 AQSK*WEXXXXXXRMEIPRRVLSRVYKRSPGSCMGE 142
           A+S  WE      R+ IP+R++  +  R  G+ +G+
Sbjct: 577 AESVYWECSSPDERIRIPQRIIRHILNRHLGNNVGD 612


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 271 FVKKRRFRAISPNDFCAFLDYALNLNHIQ 357
           F +K   R +  NDF +++ Y +NL  ++
Sbjct: 40  FEEKLARRQVKLNDFLSYIQYEINLETLR 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,273,921
Number of Sequences: 5004
Number of extensions: 18634
Number of successful extensions: 47
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)