Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_L02
         (441 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0007 - 79867-79950,80258-80303,80409-80641,80765-80836,811...    27   8.8  
08_02_0903 + 22438406-22438614,22439640-22440366,22440494-224406...    27   8.8  
05_01_0425 - 3347604-3347708,3348394-3348466,3349917-3350581,335...    27   8.8  

>10_01_0007 -
           79867-79950,80258-80303,80409-80641,80765-80836,
           81135-81230,81506-81607,81684-82349
          Length = 432

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 287 LLFLTNVISCRGQRRVSDGNSSSSRGVWRYHGGY 186
           LL L    SC   R  S+ +SSSSR V R+  G+
Sbjct: 17  LLLLLVTCSCLSARERSNSSSSSSRRVVRHLPGF 50


>08_02_0903 +
           22438406-22438614,22439640-22440366,22440494-22440679,
           22441310-22441770,22441869-22442027,22442098-22442449,
           22442563-22442842,22443330-22443661
          Length = 901

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 153 CMGEIAELVPALP 115
           CMG++ EL PALP
Sbjct: 752 CMGDVVELTPALP 764


>05_01_0425 -
           3347604-3347708,3348394-3348466,3349917-3350581,
           3350609-3351088,3351253-3351534
          Length = 534

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -2

Query: 284 LFLTNVISCRGQRRVSDGNSSSSRGVWRYHGGY*AGCINVVQ 159
           LFL  VISC G  RV  G   +  G   ++GG   G +   Q
Sbjct: 129 LFLF-VISCAGCNRVDGGGERAGAGGVGWNGGEAVGAVTAQQ 169


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,370,344
Number of Sequences: 37544
Number of extensions: 135616
Number of successful extensions: 406
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)