Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_L02
         (441 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10192| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.0  
SB_7505| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.9  
SB_9403| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.2  
SB_6056| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-14)               27   6.9  
SB_3412| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  
SB_41382| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  

>SB_10192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 373

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = -2

Query: 278 LTNVISCRGQRRVS----DGNSSSSRGVWRYHGGY*AGCINVV 162
           L  ++S +G+ RV     DG ++++R V+ Y+G +  GC +V+
Sbjct: 330 LQTILSVKGEFRVGPYKVDGYAAATRTVYEYYGCFYHGCPSVL 372


>SB_7505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 10  DDDSVLDTYSKQTTCSTNSSFS 75
           +DD V+D Y    TCS ++S+S
Sbjct: 169 NDDDVVDDYDDHLTCSVDASYS 190


>SB_9403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 155 RVWEKLRSWFRRCLRVWSGQR 93
           R+W K  SW + C R W  ++
Sbjct: 393 RLWPKCASWLKTCSRRWPSEK 413


>SB_6056| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-14)
          Length = 270

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 264 YYVR*KKKISRHLSK*FLCFSGLCIKSQPY 353
           Y V  K K  +  +K F+C SGLC++ Q Y
Sbjct: 202 YKVEMKPKGLKPPTKRFVCASGLCLQRQDY 231


>SB_3412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 22 VLDTYSKQTTCSTNSSFSSLYWPCLW 99
          V DT +   TC  N+  S LY+P  W
Sbjct: 14 VADTVAGPLTCIINNCISRLYYPNAW 39


>SB_41382| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 22 VLDTYSKQTTCSTNSSFSSLYWPCLW 99
          V DT +   TC  N+  S LY+P  W
Sbjct: 14 VADTVAGPLTCIINNCISRLYYPNAW 39


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,474,425
Number of Sequences: 59808
Number of extensions: 145131
Number of successful extensions: 400
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)