Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_K21
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    30   0.29 
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    28   1.5  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    27   2.0  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    27   2.7  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    27   3.6  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    26   4.7  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   8.2  

>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 19/73 (26%), Positives = 31/73 (42%)
 Frame = -1

Query: 311 FTVAFIRRHIVDKRTASCVSSVIEDSCGARTHTLATFVLKSALFTKTRHKEDARSKKH*N 132
           FT  ++ R I  K T++    ++   CGA     AT   +   F     +    S++   
Sbjct: 567 FTTGWLDRLIAQKVTSARPDKMLAVVCGALVRAHATADTQYRAFKSYLERGQVPSREFLK 626

Query: 131 NIFQIHFIKFNKR 93
           N++ I FI  N R
Sbjct: 627 NVYDIEFIYDNTR 639


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/61 (24%), Positives = 25/61 (40%)
 Frame = +3

Query: 534 NEDDDNPIPGTSQTMGATPRGNVLNRVTHQQDKWKRQVREQRRNIYDRHTMLNXLMTKLN 713
           N DDD P P  ++ +G       + +V+   +  K      + N  D+   LN    K +
Sbjct: 531 NSDDDKPSPAAAEDIGTNGAIEEIPQVSEVLEPEKAHTTNLQLNALDKEEDLNITTVKQS 590

Query: 714 S 716
           S
Sbjct: 591 S 591


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 569 SDDGCNSPRECFEPRYPSAGQVEASGP 649
           S    N P + F+P YP AGQ++ + P
Sbjct: 16  SSGNSNIPPQGFQPVYPVAGQLDNTAP 42


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 283 LSINGLRPVSAVLLKTAAGLGHTHLQ 206
           LS   L P+   LLK A G G THL+
Sbjct: 85  LSSVNLDPIDRSLLKVAGGSGSTHLE 110


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +1

Query: 238 SSITLLTQDAVRLSTMCLLINATV 309
           SSIT + ++ +RLS +C+ I++TV
Sbjct: 799 SSITRVYKEFIRLSKLCMRISSTV 822


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
            factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 525  EHTNEDDDNPIPGTSQTMGATPRGNVLNRVTHQQDK 632
            E +N+ DD P   TS +    P  N +NR TH  +K
Sbjct: 904  ESSNDIDDRP-SSTSPSTLKNPSINSINRQTHDVEK 938


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 267 CVLCQQCY*RQLRGSDTHTCNVCSQKCPVHQNKTQRRC 154
           CVL + C+  Q++    H C+  S+ CP      ++RC
Sbjct: 646 CVLPKSCHHPQVK----HNCHPTSEPCPPCPYFVKKRC 679


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,899,567
Number of Sequences: 5004
Number of extensions: 60977
Number of successful extensions: 157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)