Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_K21
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1668 + 35217254-35218531                                         29   3.7  
01_03_0012 + 11638363-11638476,11638854-11640678,11641855-116420...    29   3.7  

>04_04_1668 + 35217254-35218531
          Length = 425

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = -2

Query: 370 GQNS*ARSLSWSPIRGSTRPSQLHLLGGTLSINGLRPVSAV--LLKTAAGLGHTHLQRLF 197
           G  S  RSLSWS  R  +   QL  +GG L++     ++A   L      +G       +
Sbjct: 231 GSGSHLRSLSWSVSRTWSAARQLQAIGGGLTVPRANDIAATGGLASAVYAMGAVLFVVTW 290

Query: 196 SKVPCSPKQD 167
           + V   P QD
Sbjct: 291 ALVAAIPCQD 300


>01_03_0012 +
           11638363-11638476,11638854-11640678,11641855-11642096,
           11642198-11642327,11642464-11642774
          Length = 873

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 681 CVYHKCCDAAHGPDASTC 628
           CVY  CCD + G D   C
Sbjct: 457 CVYESCCDLSQGNDGHVC 474


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,934,161
Number of Sequences: 37544
Number of extensions: 421856
Number of successful extensions: 1066
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)