Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_K20
(726 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 47 2e-06
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 26 4.8
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 26 6.3
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 26 6.3
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 26 6.3
SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subun... 25 8.3
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f... 25 8.3
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 25 8.3
SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme Spa1|Schi... 25 8.3
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 47.2 bits (107), Expect = 2e-06
Identities = 21/70 (30%), Positives = 40/70 (57%)
Frame = +2
Query: 443 QELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSERIVQLIGKPDSI 622
Q+L +R L+ AG +IGKAG + ELR T + + + + P +R++ + G +++
Sbjct: 92 QQLTLRALLSTREAGIIIGKAGKNVAELRSTTNVKAGV-TKAVPNVHDRVLTISGPLENV 150
Query: 623 VSGVREVLDL 652
V R ++D+
Sbjct: 151 VRAYRFIIDI 160
Score = 46.0 bits (104), Expect = 6e-06
Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Frame = +2
Query: 293 KASITVPDCPGPERVLSITAEDDETLVEIIKDIMPCLAEFHNQGGSRMGDQELD--VRML 466
KA +T +RVL+I+ E +V + I+ A+ D +R+L
Sbjct: 126 KAGVTKAVPNVHDRVLTISGPL-ENVVRAYRFIIDIFAKNSTNPDGTPSDANTPRKLRLL 184
Query: 467 IHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSERIVQLIGKPDSIVSGVREV 643
I S G +IG+ G +IK +++K R+ + PQS+ER V++ G D++ + + E+
Sbjct: 185 IAHSLMGSIIGRNGLRIKLIQDKCSCRMIASKDMLPQSTERTVEIHGTVDNLHAAIWEI 243
Score = 39.9 bits (89), Expect = 4e-04
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +2
Query: 485 GCVIGKAGSKIKELREKTGARLKIFSNSAPQSSERIVQLIG 607
GC+IG+ GSKI E+R +G+++ I ++ ER+ + G
Sbjct: 333 GCIIGRGGSKISEIRRTSGSKISIAKEPHDETGERMFTITG 373
>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 449
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 548 LKIFSNSAPQSSERIVQLIGKPDSIVSGVREVLD-LVRQVPIKGPIQAYDPHNYD 709
L I +S ++ + I+ +G + + + V D L R I IQ Y+P N D
Sbjct: 332 LLIAMSSGSEALDAILAQMGGTEKVEDVLENVNDTLARSEEIDATIQTYNPQNID 386
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 355 FSCYGEYPFGAGAIWDCYRGF 293
F CY E P G AI C + F
Sbjct: 293 FLCYSEKPNGINAIMKCMKNF 313
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 36 LNVYCLCFSALVSFKRSI 89
L VYC F LVS+KRS+
Sbjct: 521 LAVYCDTFDVLVSYKRSL 538
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 491 VIGKAGSKIKELREKTGARLKI 556
VIGK GS + LRE G ++ +
Sbjct: 744 VIGKNGSNVSSLREDLGVQINV 765
>SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subunit
Rpc37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 242
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 247 NRKRWQQYIKAQKPVQSLYNSPRLPRPRTGTL 342
N + +Y +KP+Q+ S RL +PRT +
Sbjct: 88 NEDKAMKYGNGKKPIQTQTLSGRLQKPRTNLM 119
>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
factor complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 232 GGWVDNRKRWQQYIKAQKPVQSLYNSPRLP 321
GG +D + W Q +A+ Q Y R+P
Sbjct: 292 GGCIDREEEWIQQFQARCIKQYFYGDDRMP 321
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 8.3
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = -1
Query: 696 GSYAWIGPFIGTCLTRSRTSRTPD-TIESGFPIS*TMRSELWGAEFENIFRRAPVFSRNS 520
G+YA+ P+I R S PD IE + + G IF+ P F R S
Sbjct: 525 GNYAFSSPYIERQTNRGAVSHVPDWLIEKNYKEGFMKDVKSLGLVALEIFQGQPNFFRKS 584
Query: 519 L 517
+
Sbjct: 585 I 585
>SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme
Spa1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 226
Score = 25.4 bits (53), Expect = 8.3
Identities = 20/54 (37%), Positives = 22/54 (40%)
Frame = -3
Query: 346 YGEYPFGAGAIWDCYRGFVLASEL*YIAATFSDYRPSHLARYQEGDFIVCLPVP 185
YG P G GA W C A E A F R H+ R+ F CLP P
Sbjct: 55 YGSTPAG-GAEW-CSE----ALERSRPRAAFKQQRRRHVPRWISDSFRTCLPKP 102
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,938,188
Number of Sequences: 5004
Number of extensions: 59506
Number of successful extensions: 166
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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