Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_K20
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    24   1.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   6.8  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    21   9.0  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    21   9.0  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +3

Query: 366 RSWKSLKISCRAWQNFITRVDPGWAI 443
           R  K++     +W N +   +P WAI
Sbjct: 144 RQTKAIANKINSWDNVVVAYEPVWAI 169


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 682 DRTLYWNLPDEVQNLAH 632
           ++ L WN+P E  +L H
Sbjct: 27  EKFLGWNVPPEYSDLVH 43


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 377 IIKDIMPCLAEFH 415
           ++ DIMPC  E H
Sbjct: 33  LMPDIMPCADELH 45


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 377 IIKDIMPCLAEFH 415
           ++ DIMPC  E H
Sbjct: 33  LMPDIMPCADELH 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,923
Number of Sequences: 438
Number of extensions: 4169
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)