Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_K18
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyc...    27   2.8  
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    27   3.7  
SPBC216.06c |swi1||replication fork protection complex subunit S...    26   6.4  

>SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 266

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/48 (22%), Positives = 21/48 (43%)
 Frame = +3

Query: 198 TEKFLSKDGGLSVYISELHCPFRWSNTHVXXXXXXXXXXXXMVNKCTE 341
           T  + + + G+ + I  +  P  WSN ++            ++ KCTE
Sbjct: 96  TRNWQTNENGIVIIIQSMSHPLIWSNRNLREGDVRRATVLDVIAKCTE 143


>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 556 PHFRYPLVLLGTFY 515
           P FR P++LLGTF+
Sbjct: 354 PEFRVPVILLGTFF 367


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
 Frame = +1

Query: 283 FHYPVFDKVRCHQWLTNAQRLDFLNLKVSQLKNRVV------CQHHFEDYWFMNFKKEKL 444
           F Y +F K +CH +L    RLDFL +      + V        +  FE ++    +K   
Sbjct: 595 FFYRIFVKQKCHVYL---YRLDFLRVLDKMFNDHVYFSTTNSARQDFEQFFVYYMRKLSD 651

Query: 445 KFEAVPTL 468
             + VP L
Sbjct: 652 ALKDVPAL 659


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,773,955
Number of Sequences: 5004
Number of extensions: 57509
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)