Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_K16
         (564 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    95   3e-22
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   4.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   4.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   4.9  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 95.5 bits (227), Expect = 3e-22
 Identities = 44/86 (51%), Positives = 58/86 (67%)
 Frame = +2

Query: 176 GHFQFNYETGNGIYAQAEGAVKNVNSEYPAIEVKGAYKYTSPDGQPIDLAYVADENGYQP 355
           G++  N+ET NGI  Q  G  K V++E P +  +G+  YT+PDGQ + + YVADENG+Q 
Sbjct: 40  GNYINNFETSNGISHQESGQPKQVDNETPVVS-QGSDSYTAPDGQQVSITYVADENGFQV 98

Query: 356 QGSHLPTPHPIPEAIARALAYIEAHP 433
           QGSH+PT  PIP  I RAL +  AHP
Sbjct: 99  QGSHIPTAPPIPPEIQRALEWNAAHP 124


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
 Frame = +1

Query: 379 SPNSRGDRPR---SCLHRGPPPQPL 444
           SP+S  D  R   SCL  GPP  PL
Sbjct: 420 SPSSLADGARFGGSCLIHGPPLPPL 444


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
 Frame = +1

Query: 379 SPNSRGDRPR---SCLHRGPPPQPL 444
           SP+S  D  R   SCL  GPP  PL
Sbjct: 420 SPSSLADGARFGGSCLIHGPPLPPL 444


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 246 STQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNP 356
           S  N   +K+   +  LP+ DNP  S  +L     NP
Sbjct: 293 SRMNLTLAKMEKTSKPLPMVDNPE-STGNLVYIYNNP 328


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 299  PDGQP-IDLAYVADENGYQPQGSHLPTPHPIPEAIARA 409
            P+  P +DL+    + G    GS   T  P P +I+RA
Sbjct: 1369 PERVPTVDLSPSPSDRGRNDDGSDRLTSPPTPLSISRA 1406


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
 Frame = +2

Query: 230 GAVKNVNSEYPAIEVKGAYKYTSPDGQ--PID 319
           G    V +  P  E    Y+Y  PDG   PID
Sbjct: 264 GLPVGVTAAIPTSENPADYRYFCPDGSKVPID 295


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
 Frame = +2

Query: 230 GAVKNVNSEYPAIEVKGAYKYTSPDGQ--PID 319
           G    V +  P  E    Y+Y  PDG   PID
Sbjct: 264 GLPVGVTAAIPTSENPADYRYFCPDGSKVPID 295


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 231 VPSRTSTQNTPPSKLRVPTSTLP 299
           +P   S   TP S +  P  TLP
Sbjct: 654 LPRPISCHTTPDSFIEAPNKTLP 676


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
 Frame = +2

Query: 230 GAVKNVNSEYPAIEVKGAYKYTSPDGQ--PID 319
           G    V +  P  E    Y+Y  PDG   PID
Sbjct: 264 GLPVGVTAAIPTSENPADYRYFCPDGSKVPID 295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,841
Number of Sequences: 438
Number of extensions: 3305
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)