Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_K15
(778 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 32 0.11
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch... 27 3.0
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.0
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 27 4.0
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 26 5.2
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c... 26 6.9
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces... 26 6.9
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos... 25 9.2
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 25 9.2
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 31.9 bits (69), Expect = 0.11
Identities = 20/86 (23%), Positives = 40/86 (46%)
Frame = +3
Query: 318 VTGFRNCIVDSVSYNDEEAEMKFHCNLTIKGKYKAKGQILIVSINGDGDAKIKITDVALM 497
+ GF+N + S S K ++++ A ++ ++N GD +I++ + +
Sbjct: 4 LAGFKNLLKHSKSSKGRSNASK-SVDVSVNRDVAAYTELAAKNVNAGGDEEIRVANYPGL 62
Query: 498 LKVKFEDVERDGEVYQEVKSYSLDYK 575
K + + DG Q K+YS+D K
Sbjct: 63 EKYQLIENLGDGAFSQVYKAYSIDRK 88
>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 341
Score = 27.1 bits (57), Expect = 3.0
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Frame = +3
Query: 150 CPGQKSECLKNTVQETIPIFSKGIPSLNI-EP--------IDPLKQDKVVVELPGGFKVE 302
CP K + N V T+PIF K + + + +P +D ++ + ++ G K E
Sbjct: 137 CPEAKYLVVTNPVNSTVPIFKKALERVGVHQPKHLFGVTTLDSVRASRFTSQVTNG-KAE 195
Query: 303 LLNGTVTG 326
LL+ V G
Sbjct: 196 LLHIPVVG 203
>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 657
Score = 27.1 bits (57), Expect = 3.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 353 DRIHDAISKARHSSIQEFHF 294
D + D S+ HS I++FHF
Sbjct: 384 DEVPDTASETEHSEIEDFHF 403
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -2
Query: 57 FSYYKLK*NPFINQGIGR 4
FS YKLK NPF IGR
Sbjct: 406 FSRYKLKENPFFGATIGR 423
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 135 DFIKICPGQKSECLKNTVQETIPIFSKGIPSLNIEPIDPLKQDKVVV 275
+FI S CL+ + +PIF KG P+ N++ ++ K+ K ++
Sbjct: 578 EFIMKALASTSRCLRVVAAKVLPIFIKG-PN-NLDIVEFHKESKALI 622
>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 371
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = -3
Query: 212 RENRYRLLYSILQTFRLLPGAYFNEIRGYSSVTLIAIYSEKYRNCKK 72
+E ++ + S++ L G++ ++ GY S+ + + Y CKK
Sbjct: 82 KEKKFNVGISVIVRVTLKDGSFHEDV-GYGSIENCRVKALAYEKCKK 127
>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 538
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 159 QKSECLKNTVQETIP-IFSKGIPSLNIEPIDPLKQDKVVVELPGGF 293
Q + +T + T P + +G P+ + D KQ ++ E PGGF
Sbjct: 22 QHASSTDSTSEHTDPAVADEGFPAEQYQSADLEKQQLLIEEGPGGF 67
>SPCC1235.12c |mug146||meiotically upregulated gene
Mug46|Schizosaccharomyces pombe|chr 3|||Manual
Length = 311
Score = 25.4 bits (53), Expect = 9.2
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +3
Query: 150 CPGQKSECLKNTVQETIPIFSKGIPSLNIEPIDPLKQDKVV-VELPGGFKV--ELLNGT 317
C + K T ++ +F++ + IDP+ DK+V + F + ELLN T
Sbjct: 171 CSSASNSLYKQTDLTSLCMFNQNKIQTDWSSIDPMDNDKIVCADFEKNFNILKELLNNT 229
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = +3
Query: 300 ELLNGTVTGFRNCIVDSVSYNDEEAEMK----FHCNL 398
E+ G+ G +NCI +SY + M+ + CNL
Sbjct: 334 EMDKGSDVGLKNCIRAKISYENPNKAMRDPVIYRCNL 370
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,989,812
Number of Sequences: 5004
Number of extensions: 61810
Number of successful extensions: 197
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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